Publications

@article{auger_regeneration_2010,
	title = {Regeneration of oral siphon pigment organs in the ascidian \textit{{Ciona} intestinalis}},
	volume = {339},
	issn = {00121606},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0012160609014651},
	doi = {10.1016/j.ydbio.2009.12.040},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Developmental Biology},
	author = {Auger, Hélène and Sasakura, Yasunori and Joly, Jean-Stéphane and Jeffery, William R.},
	month = mar,
	year = {2010},
	pages = {374--389},
}

@article{horie_simple_2010,
	title = {Simple {Motor} {System} of the {Ascidian} {Larva}: {Neuronal} {Complex} {Comprising} {Putative} {Cholinergic} and {GABAergic}/{Glycinergic} {Neurons}},
	volume = {27},
	issn = {0289-0003},
	shorttitle = {Simple {Motor} {System} of the {Ascidian} {Larva}},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.27.181},
	doi = {10.2108/zsj.27.181},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Zoological Science},
	author = {Horie, Takeo and Nakagawa, Masashi and Sasakura, Yasunori and Kusakabe, Takehiro G. and Tsuda, Motoyuki},
	month = feb,
	year = {2010},
	pages = {181--190},
}

@article{hozumi_efficient_2010,
	title = {Efficient transposition of a single \textit{{Minos}} transposon copy in the genome of the ascidian \textit{{Ciona} intestinalis} with a transgenic line expressing transposase in eggs},
	volume = {239},
	issn = {10588388},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/dvdy.22254},
	doi = {10.1002/dvdy.22254},
	language = {en},
	number = {4},
	urldate = {2021-07-27},
	journal = {Developmental Dynamics},
	author = {Hozumi, Akiko and Kawai, Narudo and Yoshida, Reiko and Ogura, Yosuke and Ohta, Naoyuki and Satake, Honoo and Satoh, Nori and Sasakura, Yasunori},
	month = apr,
	year = {2010},
	pages = {1076--1088},
}

@article{katow_development_2010,
	title = {Development of a dopaminergic system in sea urchin embryos and larvae},
	volume = {213},
	issn = {1477-9145, 0022-0949},
	url = {https://journals.biologists.com/jeb/article/213/16/2808/9863/Development-of-a-dopaminergic-system-in-sea-urchin},
	doi = {10.1242/jeb.042150},
	abstract = {SUMMARY
            The mechanisms that regulate the organized swimming movements of sea urchin blastulae are largely unknown. Using immunohistochemistry, we found that dopamine (DA) and the Hemicentrotus pulcherrimus homolog of the dopamine receptor D1 (Hp-DRD1) were strongly co-localized in 1–2 μm diameter granules (DA/DRD1 granules). Furthermore, these granules were arranged across the entire surface of blastulae as they developed locomotory cilia before hatching, and remained evident until metamorphosis. DA/DRD1 granules were associated with the basal bodies of cilia, and were densely packed in the ciliary band by the eight-arm pluteus stage. The transcription of Hp-DRD1 was detected from the unfertilized egg stage throughout the period of larval development. Treatment with S-(–)-carbidopa, an inhibitor of aromatic-l-amino acid decarboxylase, for 20–24 h (i) from soon after insemination until the 20 h post-fertilization (20 hpf) early gastrula stage and (ii) from the 24 hpf prism larva stage until the 48 hpf pluteus stage, inhibited the formation of DA granules and decreased the swimming activity of blastulae and larvae in a dose-dependent manner. Exogenous DA rescued these deprivations. The formation of DRD1 granules was not affected. However, in 48 hpf plutei, the serotonergic nervous system (5HT-NS) developed normally. Morpholino antisense oligonucleotides directed against Hp-DRD1 inhibited the formation of DRD1 granules and the swimming of larvae, but did not disturb the formation of DA granules. Thus, the formation of DRD1 granules and DA granules occurs chronologically closely but mechanically independently and the swimming of blastulae is regulated by the dopaminergic system. In plutei, the 5HT-NS closely surrounded the ciliary bands, suggesting the functional collaboration with the dopaminergic system in larvae.},
	language = {en},
	number = {16},
	urldate = {2021-07-27},
	journal = {Journal of Experimental Biology},
	author = {Katow, Hideki and Suyemitsu, Takashi and Ooka, Shio and Yaguchi, Junko and Jin-nai, Takayuki and Kuwahara, Iku and Katow, Tomoko and Yaguchi, Shunsuke and Abe, Hirokazu},
	month = aug,
	year = {2010},
	pages = {2808--2819},
}

SUMMARY The mechanisms that regulate the organized swimming movements of sea urchin blastulae are largely unknown. Using immunohistochemistry, we found that dopamine (DA) and the Hemicentrotus pulcherrimus homolog of the dopamine receptor D1 (Hp-DRD1) were strongly co-localized in 1–2 μm diameter granules (DA/DRD1 granules). Furthermore, these granules were arranged across the entire surface of blastulae as they developed locomotory cilia before hatching, and remained evident until metamorphosis. DA/DRD1 granules were associated with the basal bodies of cilia, and were densely packed in the ciliary band by the eight-arm pluteus stage. The transcription of Hp-DRD1 was detected from the unfertilized egg stage throughout the period of larval development. Treatment with S-(–)-carbidopa, an inhibitor of aromatic-l-amino acid decarboxylase, for 20–24 h (i) from soon after insemination until the 20 h post-fertilization (20 hpf) early gastrula stage and (ii) from the 24 hpf prism larva stage until the 48 hpf pluteus stage, inhibited the formation of DA granules and decreased the swimming activity of blastulae and larvae in a dose-dependent manner. Exogenous DA rescued these deprivations. The formation of DRD1 granules was not affected. However, in 48 hpf plutei, the serotonergic nervous system (5HT-NS) developed normally. Morpholino antisense oligonucleotides directed against Hp-DRD1 inhibited the formation of DRD1 granules and the swimming of larvae, but did not disturb the formation of DA granules. Thus, the formation of DRD1 granules and DA granules occurs chronologically closely but mechanically independently and the swimming of blastulae is regulated by the dopaminergic system. In plutei, the 5HT-NS closely surrounded the ciliary bands, suggesting the functional collaboration with the dopaminergic system in larvae.

@article{kjeldsen_two_2010,
	title = {Two {Types} of {Endosymbiotic} {Bacteria} in the {Enigmatic} {Marine} {Worm} \textit{{Xenoturbella} bocki}},
	volume = {76},
	issn = {0099-2240, 1098-5336},
	url = {https://journals.asm.org/doi/10.1128/AEM.01092-09},
	doi = {10.1128/AEM.01092-09},
	abstract = {ABSTRACT
            
              Two types of endosymbiotic bacteria were identified in the gastrodermis of the marine invertebrate
              Xenoturbella
              bocki
              (Xenoturbellida, Bilateria). While previously described
              Chlamydia
              -like endosymbionts were rare,
              Gammaproteobacteria
              distantly related to other endosymbionts and pathogens were abundant. The endosymbionts should be considered when interpreting the poorly understood ecology and evolution of
              Xenoturbella
              .},
	language = {en},
	number = {8},
	urldate = {2021-07-27},
	journal = {Applied and Environmental Microbiology},
	author = {Kjeldsen, Kasper Urup and Obst, Matthias and Nakano, Hiroaki and Funch, Peter and Schramm, Andreas},
	month = apr,
	year = {2010},
	pages = {2657--2662},
}

ABSTRACT Two types of endosymbiotic bacteria were identified in the gastrodermis of the marine invertebrate Xenoturbella bocki (Xenoturbellida, Bilateria). While previously described Chlamydia -like endosymbionts were rare, Gammaproteobacteria distantly related to other endosymbionts and pathogens were abundant. The endosymbionts should be considered when interpreting the poorly understood ecology and evolution of Xenoturbella .

@article{klimpel_gastrointestinal_2010,
	title = {Gastrointestinal and ectoparasites from urban stray dogs in {Fortaleza} ({Brazil}): high infection risk for humans?},
	volume = {107},
	issn = {0932-0113, 1432-1955},
	shorttitle = {Gastrointestinal and ectoparasites from urban stray dogs in {Fortaleza} ({Brazil})},
	url = {http://link.springer.com/10.1007/s00436-010-1926-7},
	doi = {10.1007/s00436-010-1926-7},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {Parasitology Research},
	author = {Klimpel, Sven and Heukelbach, Jörg and Pothmann, David and Rückert, Sonja},
	month = aug,
	year = {2010},
	pages = {713--719},
}

@article{konno_distribution_2010,
	title = {Distribution and structural diversity of cilia in tadpole larvae of the ascidian \textit{{Ciona} intestinalis}},
	volume = {337},
	issn = {00121606},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S001216060901255X},
	doi = {10.1016/j.ydbio.2009.10.012},
	language = {en},
	number = {1},
	urldate = {2021-07-27},
	journal = {Developmental Biology},
	author = {Konno, Alu and Kaizu, Maiko and Hotta, Kohji and Horie, Takeo and Sasakura, Yasunori and Ikeo, Kazuho and Inaba, Kazuo},
	month = jan,
	year = {2010},
	pages = {42--62},
}

@article{konno_multidimensional_2010,
	title = {Multidimensional {Analysis} of {Uncharacterized} {Sperm} {Proteins} in \textit{{Ciona} intestinalis} : {EST}-{Based} {Analysis} and {Functional} {Immunoscreening} of {Testis}-{Expressed} {Genes}},
	volume = {27},
	issn = {0289-0003},
	shorttitle = {Multidimensional {Analysis} of {Uncharacterized} {Sperm} {Proteins} in \textit{{Ciona} intestinalis}},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.27.204},
	doi = {10.2108/zsj.27.204},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Zoological Science},
	author = {Konno, Alu and Padma, Potturi and Ushimaru, Yuji and Inaba, Kazuo},
	month = feb,
	year = {2010},
	pages = {204--215},
}

@article{miyamoto_development_2010,
	title = {Development of the nervous system in the acorn worm \textit{{Balanoglossus} simodensis}: insights into nervous system evolution: {Development} of hemichordate nervous system},
	volume = {12},
	issn = {1520541X, 1525142X},
	shorttitle = {Development of the nervous system in the acorn worm {Balanoglossus} simodensis},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1525-142X.2010.00428.x},
	doi = {10.1111/j.1525-142X.2010.00428.x},
	language = {en},
	number = {4},
	urldate = {2021-07-27},
	journal = {Evolution \& Development},
	author = {Miyamoto, Norio and Nakajima, Yoko and Wada, Hiroshi and Saito, Yasunori},
	month = jul,
	year = {2010},
	keywords = {wrongWada},
	pages = {416--424},
}

@article{miyamoto_morphological_2010,
	title = {Morphological characterization of the asexual reproduction in the acorn worm \textit{{Balanoglossus} simodensis}: {Asexual} reproduction in \textit{{B}. simodensis}},
	volume = {52},
	issn = {00121592},
	shorttitle = {Morphological characterization of the asexual reproduction in the acorn worm {Balanoglossus} simodensis},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1440-169X.2010.01197.x},
	doi = {10.1111/j.1440-169X.2010.01197.x},
	language = {en},
	number = {7},
	urldate = {2021-07-27},
	journal = {Development, Growth \& Differentiation},
	author = {Miyamoto, Norio and Saito, Yasunori},
	month = sep,
	year = {2010},
	pages = {615--627},
}

@article{morita_sperm_2010,
	title = {Sperm motility adaptation to ion-differing aquatic environments in the {Tanganyikan} cichlid, \textit{{Astatotilapia} burtoni}},
	volume = {9999A},
	issn = {19325223, 19325231},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/jez.587},
	doi = {10.1002/jez.587},
	language = {en},
	urldate = {2021-07-27},
	journal = {Journal of Experimental Zoology Part A: Ecological Genetics and Physiology},
	author = {Morita, Masaya and Awata, Satoshi and Takahashi, Tetsumi and Takemura, Akihiro and Kohda, Masanori},
	year = {2010},
	pages = {n/a--n/a},
}

@article{morita_ocean_2010,
	title = {Ocean acidification reduces sperm flagellar motility in broadcast spawning reef invertebrates},
	volume = {18},
	issn = {0967-1994, 1469-8730},
	url = {https://www.cambridge.org/core/product/identifier/S0967199409990177/type/journal_article},
	doi = {10.1017/S0967199409990177},
	abstract = {Summary
            Ocean acidification is now recognized as a threat to marine ecosystems; however, the effect of ocean acidification on fertilization in marine organisms is still largely unknown. In this study, we focused on sperm flagellar motility in broadcast spawning reef invertebrates (a coral and a sea cucumber). Below pH 7.7, the pH predicted to occur within the next 100 years, sperm flagellar motility was seriously impaired in these organisms. Considering that sperm flagellar motility is indispensable for transporting the paternal haploid genome for fertilization, fertilization taking place in seawater may decline in the not too distant future. Urgent surveys are necessary for a better understanding of the physiological consequences of ocean acidification on sperm flagellar motility in a wide range of marine invertebrates.},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Zygote},
	author = {Morita, Masaya and Suwa, Ryota and Iguchi, Akira and Nakamura, Masako and Shimada, Kazuaki and Sakai, Kazuhiko and Suzuki, Atsushi},
	month = may,
	year = {2010},
	pages = {103--107},
}

Summary Ocean acidification is now recognized as a threat to marine ecosystems; however, the effect of ocean acidification on fertilization in marine organisms is still largely unknown. In this study, we focused on sperm flagellar motility in broadcast spawning reef invertebrates (a coral and a sea cucumber). Below pH 7.7, the pH predicted to occur within the next 100 years, sperm flagellar motility was seriously impaired in these organisms. Considering that sperm flagellar motility is indispensable for transporting the paternal haploid genome for fertilization, fertilization taking place in seawater may decline in the not too distant future. Urgent surveys are necessary for a better understanding of the physiological consequences of ocean acidification on sperm flagellar motility in a wide range of marine invertebrates.

@article{ohta_transposon-mediated_2010,
	title = {Transposon-{Mediated} {Enhancer} {Detection} {Reveals} the {Location}, {Morphology} and {Development} of the {Cupular} {Organs}, which are {Putative} {Hydrodynamic} {Sensors}, in the {Ascidian} \textit{{Ciona} intestinalis}},
	volume = {27},
	issn = {0289-0003},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.27.842},
	doi = {10.2108/zsj.27.842},
	language = {en},
	number = {11},
	urldate = {2021-07-27},
	journal = {Zoological Science},
	author = {Ohta, Naoyuki and Horie, Takeo and Satoh, Nori and Sasakura, Yasunori},
	month = nov,
	year = {2010},
	pages = {842--850},
}

@article{ooka_spatiotemporal_2010,
	title = {Spatiotemporal expression pattern of an encephalopsin orthologue of the sea urchin \textit{{Hemicentrotus} pulcherrimus} during early development, and its potential role in larval vertical migration: {Expression} and potential role of {Hp}-{ECPN}},
	volume = {52},
	issn = {00121592, 1440169X},
	shorttitle = {Spatiotemporal expression pattern of an encephalopsin orthologue of the sea urchin {Hemicentrotus} pulcherrimus during early development, and its potential role in larval vertical migration},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1440-169X.2009.01154.x},
	doi = {10.1111/j.1440-169X.2009.01154.x},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Development, Growth \& Differentiation},
	author = {Ooka, Shioh and Katow, Tomoko and Yaguchi, Shunsuke and Yaguchi, Junko and Katow, Hideki},
	month = jan,
	year = {2010},
	pages = {195--207},
}

@article{prokopowicz_parasitic_2010,
	title = {Parasitic infection of the hyperiid amphipod \textit{{Themisto} libellula} in the {Canadian} {Beaufort} {Sea} ({Arctic} {Ocean}), with a description of \textit{{Ganymedes} themistos} sp. n. ({Apicomplexa}, {Eugregarinorida})},
	volume = {33},
	issn = {0722-4060, 1432-2056},
	url = {http://link.springer.com/10.1007/s00300-010-0821-0},
	doi = {10.1007/s00300-010-0821-0},
	language = {en},
	number = {10},
	urldate = {2021-07-27},
	journal = {Polar Biology},
	author = {Prokopowicz, Anna J. and Rueckert, Sonja and Leander, Brian S. and Michaud, Josée and Fortier, Louis},
	month = oct,
	year = {2010},
	pages = {1339--1350},
}

@article{rueckert_molecular_2010,
	title = {Molecular systematics of marine gregarines ({Apicomplexa}) from {North}-eastern {Pacific} polychaetes and nemerteans, with descriptions of three novel species: \textit{{Lecudina} phyllochaetopteri} sp. nov., \textit{{Difficilina} tubulani }sp. nov. and \textit{{Difficilina} paranemertis} sp. nov.},
	volume = {60},
	issn = {1466-5026, 1466-5034},
	shorttitle = {Molecular systematics of marine gregarines ({Apicomplexa}) from {North}-eastern {Pacific} polychaetes and nemerteans, with descriptions of three novel species},
	url = {https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.016436-0},
	doi = {10.1099/ijs.0.016436-0},
	abstract = {Most eugregarine apicomplexans infecting the intestines of marine invertebrates have been described within the family Lecudinidae and the type genus
              Lecudina
              . The diversity of these parasites is vast and poorly understood and only a tiny number of species has been characterized at the molecular phylogenetic level. DNA sequences coupled with high-resolution micrographs of trophozoites provide an efficient and precise approach for delimiting gregarine lineages from one another and also facilitate our overall understanding of gregarine biodiversity. In this study, phylogenetic analyses of small subunit (SSU) rDNA sequences from five (uncultivated) gregarines isolated from polychaetes and nemerteans in the North-eastern Pacific Ocean are presented.
              Lecudina phyllochaetopteri
              sp. nov. was isolated from the intestines of the parchment tubeworm
              Phyllochaetopterus prolifica
              (Polychaeta).
              Lecudina longissima
              and
              Lecudina polymorpha
              were both isolated from the intestines of
              Lumbrineris japonica
              (Polychaeta).
              Difficilina tubulani
              sp. nov. was isolated from the nemertean
              Tubulanus polymorpha
              and
              Difficilina paranemertis
              sp. nov. was isolated from the nemertean
              Paranemertes peregrina
              . This is the first report of molecular sequence data from gregarines that infect nemerteans. The two novel species of the genus
              Difficilina
              described in this study formed a strongly supported clade in the phylogenetic analyses. This
              Difficilina
              clade formed the sister group to a robust subclade of lecudinids consisting of
              Lecudina longissima
              ,
              Lecudina phyllochaetopteri
              sp. nov. (which lacked epicytic folds),
              Lecudina tuzetae
              , species of the genus
              Lankesteria
              and several sequences derived from previous environmental DNA surveys of marine biodiversity.},
	language = {en},
	number = {11},
	urldate = {2021-07-27},
	journal = {International Journal of Systematic and Evolutionary Microbiology},
	author = {Rueckert, Sonja and Chantangsi, Chitchai and Leander, Brian S.},
	month = nov,
	year = {2010},
	pages = {2681--2690},
}

Most eugregarine apicomplexans infecting the intestines of marine invertebrates have been described within the family Lecudinidae and the type genus Lecudina . The diversity of these parasites is vast and poorly understood and only a tiny number of species has been characterized at the molecular phylogenetic level. DNA sequences coupled with high-resolution micrographs of trophozoites provide an efficient and precise approach for delimiting gregarine lineages from one another and also facilitate our overall understanding of gregarine biodiversity. In this study, phylogenetic analyses of small subunit (SSU) rDNA sequences from five (uncultivated) gregarines isolated from polychaetes and nemerteans in the North-eastern Pacific Ocean are presented. Lecudina phyllochaetopteri sp. nov. was isolated from the intestines of the parchment tubeworm Phyllochaetopterus prolifica (Polychaeta). Lecudina longissima and Lecudina polymorpha were both isolated from the intestines of Lumbrineris japonica (Polychaeta). Difficilina tubulani sp. nov. was isolated from the nemertean Tubulanus polymorpha and Difficilina paranemertis sp. nov. was isolated from the nemertean Paranemertes peregrina . This is the first report of molecular sequence data from gregarines that infect nemerteans. The two novel species of the genus Difficilina described in this study formed a strongly supported clade in the phylogenetic analyses. This Difficilina clade formed the sister group to a robust subclade of lecudinids consisting of Lecudina longissima , Lecudina phyllochaetopteri sp. nov. (which lacked epicytic folds), Lecudina tuzetae , species of the genus Lankesteria and several sequences derived from previous environmental DNA surveys of marine biodiversity.

@article{rueckert_description_2010,
	title = {Description of \textit{{Trichotokara} nothriae} n. gen. et sp. ({Apicomplexa}, {Lecudinidae}) – {An} intestinal gregarine of {Nothria} conchylega ({Polychaeta}, {Onuphidae})},
	volume = {104},
	issn = {00222011},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0022201110000650},
	doi = {10.1016/j.jip.2010.03.005},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {Journal of Invertebrate Pathology},
	author = {Rueckert, Sonja and Leander, Brian S.},
	month = jul,
	year = {2010},
	pages = {172--179},
}

@article{ruckert_parasites_2010,
	title = {Parasites of cultured and wild brown-marbled grouper \textit{{Epinephelus} fuscoguttatus} ({Forsskål}, 1775) in {Lampung} {Bay}, {Indonesia}: {Parasites} of cultured and wild brown-marbled grouper},
	volume = {41},
	issn = {1355557X},
	shorttitle = {Parasites of cultured and wild brown-marbled grouper \textit{{Epinephelus} fuscoguttatus} ({Forsskål}, 1775) in {Lampung} {Bay}, {Indonesia}},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1365-2109.2009.02403.x},
	doi = {10.1111/j.1365-2109.2009.02403.x},
	language = {en},
	number = {8},
	urldate = {2021-07-27},
	journal = {Aquaculture Research},
	author = {Rückert, Sonja and Klimpel, Sven and Palm, Harry Wilhelm},
	month = jul,
	year = {2010},
	pages = {1158--1169},
}

@article{sasakura_maternal_2010,
	title = {Maternal factor-mediated epigenetic gene silencing in the ascidian \textit{{Ciona} intestinalis}},
	volume = {283},
	issn = {1617-4615, 1617-4623},
	url = {http://link.springer.com/10.1007/s00438-009-0500-4},
	doi = {10.1007/s00438-009-0500-4},
	language = {en},
	number = {1},
	urldate = {2021-07-27},
	journal = {Molecular Genetics and Genomics},
	author = {Sasakura, Yasunori and Suzuki, Miho M. and Hozumi, Akiko and Inaba, Kazuo and Satoh, Nori},
	month = jan,
	year = {2010},
	pages = {99},
}

@article{sasakura_excision_2010,
	title = {Excision and {Transposition} {Activity} of {Tc1}/ \textit{mariner} {Superfamily} {Transposons} in {Sea} {Urchin} {Embryos}},
	volume = {27},
	issn = {0289-0003},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.27.256},
	doi = {10.2108/zsj.27.256},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {Zoological Science},
	author = {Sasakura, Yasunori and Yaguchi, Junko and Yaguchi, Shunsuke and Yajima, Mamiko},
	month = mar,
	year = {2010},
	pages = {256--262},
}

@article{squires_serotonin_2010,
	title = {Serotonin and its metabolism in basal deuterostomes: insights from \textit{{Strongylocentrotus} purpuratus} and \textit{{Xenoturbella} bocki}},
	volume = {213},
	issn = {1477-9145, 0022-0949},
	shorttitle = {Serotonin and its metabolism in basal deuterostomes},
	url = {https://journals.biologists.com/jeb/article/213/15/2647/9729/Serotonin-and-its-metabolism-in-basal},
	doi = {10.1242/jeb.042374},
	abstract = {SUMMARY
            Serotonin (5-HT), an important molecule in metazoans, is involved in a range of biological processes including neurotransmission and neuromodulation. Both its creation and release are tightly regulated, as is its removal. Multiple neurochemical pathways are responsible for the catabolism of 5-HT and are phyla specific; therefore, by elucidating these catabolic pathways we glean greater understanding of the relationships and origins of various transmitter systems. Here, 5-HT catabolic pathways were studied in Strongylocentrotus purpuratus and Xenoturbella bocki, two organisms occupying distinct positions in deuterostomes. The 5-HT-related compounds detected in these organisms were compared with those reported in other phyla. In S. purpuratus, 5-HT-related metabolites include N-acetyl serotonin, γ-glutamyl-serotonin and 5-hydroxyindole acetic acid; the quantity and type were found to vary based on the specific tissues analyzed. In addition to these compounds, varying levels of tryptamine were also seen. Upon addition of a 5-HT precursor and a monoamine oxidase inhibitor, 5-HT itself was detected. In similar experiments using X. bocki tissues, the 5-HT-related compounds found included 5-HT sulfate, γ-glutamyl-serotonin and 5-hydroxyindole acetic acid, as well as 5-HT and tryptamine. The sea urchin metabolizes 5-HT in a manner similar to both gastropod mollusks, as evidenced by the detection of γ-glutamyl-serotonin, and vertebrates, as indicated by the presence of 5-hydroxyindole acetic acid and N-acetyl serotonin. In contrast, 5-HT metabolism in X. bocki appears more similar to common protostome 5-HT catabolic pathways.},
	language = {en},
	number = {15},
	urldate = {2021-07-27},
	journal = {Journal of Experimental Biology},
	author = {Squires, Leah N. and Rubakhin, Stanislav S. and Wadhams, Andinet Amare and Talbot, Kristen N. and Nakano, Hiroaki and Moroz, Leonid L. and Sweedler, Jonathan V.},
	month = aug,
	year = {2010},
	pages = {2647--2654},
}

SUMMARY Serotonin (5-HT), an important molecule in metazoans, is involved in a range of biological processes including neurotransmission and neuromodulation. Both its creation and release are tightly regulated, as is its removal. Multiple neurochemical pathways are responsible for the catabolism of 5-HT and are phyla specific; therefore, by elucidating these catabolic pathways we glean greater understanding of the relationships and origins of various transmitter systems. Here, 5-HT catabolic pathways were studied in Strongylocentrotus purpuratus and Xenoturbella bocki, two organisms occupying distinct positions in deuterostomes. The 5-HT-related compounds detected in these organisms were compared with those reported in other phyla. In S. purpuratus, 5-HT-related metabolites include N-acetyl serotonin, γ-glutamyl-serotonin and 5-hydroxyindole acetic acid; the quantity and type were found to vary based on the specific tissues analyzed. In addition to these compounds, varying levels of tryptamine were also seen. Upon addition of a 5-HT precursor and a monoamine oxidase inhibitor, 5-HT itself was detected. In similar experiments using X. bocki tissues, the 5-HT-related compounds found included 5-HT sulfate, γ-glutamyl-serotonin and 5-hydroxyindole acetic acid, as well as 5-HT and tryptamine. The sea urchin metabolizes 5-HT in a manner similar to both gastropod mollusks, as evidenced by the detection of γ-glutamyl-serotonin, and vertebrates, as indicated by the presence of 5-hydroxyindole acetic acid and N-acetyl serotonin. In contrast, 5-HT metabolism in X. bocki appears more similar to common protostome 5-HT catabolic pathways.

@article{suwa_effects_2010,
	title = {Effects of acidified seawater on early life stages of scleractinian corals ({Genus} \textit{{Acropora}})},
	volume = {76},
	issn = {0919-9268, 1444-2906},
	url = {http://link.springer.com/10.1007/s12562-009-0189-7},
	doi = {10.1007/s12562-009-0189-7},
	language = {en},
	number = {1},
	urldate = {2021-07-27},
	journal = {Fisheries Science},
	author = {Suwa, Ryota and Nakamura, Masako and Morita, Masaya and Shimada, Kazuaki and Iguchi, Akira and Sakai, Kazuhiko and Suzuki, Atsushi},
	month = jan,
	year = {2010},
	pages = {93--99},
}

@article{terakubo_network_2010,
	title = {Network structure of projections extending from peripheral neurons in the tunic of ascidian larva},
	volume = {239},
	issn = {10588388},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/dvdy.22361},
	doi = {10.1002/dvdy.22361},
	language = {en},
	number = {8},
	urldate = {2021-07-27},
	journal = {Developmental Dynamics},
	author = {Terakubo, Hiroshi Q. and Nakajima, Yoko and Sasakura, Yasunori and Horie, Takeo and Konno, Alu and Takahashi, Hiroki and Inaba, Kazuo and Hotta, Kohji and Oka, Kotaro},
	month = aug,
	year = {2010},
	pages = {2278--2287},
}

@article{yaguchi_tgf_2010,
	title = {{TGFβ} signaling positions the ciliary band and patterns neurons in the sea urchin embryo},
	volume = {347},
	issn = {00121606},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0012160610010018},
	doi = {10.1016/j.ydbio.2010.08.009},
	language = {en},
	number = {1},
	urldate = {2021-07-27},
	journal = {Developmental Biology},
	author = {Yaguchi, Shunsuke and Yaguchi, Junko and Angerer, Robert C. and Angerer, Lynne M. and Burke, Robert D.},
	month = nov,
	year = {2010},
	pages = {71--81},
}

@article{yaguchi_ankat-1_2010,
	title = {{ankAT}-1 is a novel gene mediating the apical tuft formation in the sea urchin embryo},
	volume = {348},
	issn = {00121606},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0012160610010754},
	doi = {10.1016/j.ydbio.2010.09.011},
	language = {en},
	number = {1},
	urldate = {2021-07-27},
	journal = {Developmental Biology},
	author = {Yaguchi, Shunsuke and Yaguchi, Junko and Wei, Zheng and Shiba, Kogiku and Angerer, Lynne M. and Inaba, Kazuo},
	month = dec,
	year = {2010},
	pages = {67--75},
}

@article{yamazaki_nbrp_2010,
	title = {{NBRP} databases: databases of biological resources in {Japan}},
	volume = {38},
	issn = {0305-1048, 1362-4962},
	shorttitle = {{NBRP} databases},
	url = {http://nar.oxfordjournals.org/lookup/doi/10.1093/nar/gkp996},
	doi = {10.1093/nar/gkp996},
	language = {en},
	number = {Database},
	urldate = {2021-07-27},
	journal = {Nucleic Acids Research},
	author = {Yamazaki, Y. and Akashi, R. and Banno, Y. and Endo, T. and Ezura, H. and Fukami-Kobayashi, K. and Inaba, K. and Isa, T. and Kamei, K. and Kasai, F. and Kobayashi, M. and Kurata, N. and Kusaba, M. and Matuzawa, T. and Mitani, S. and Nakamura, T. and Nakamura, Y. and Nakatsuji, N. and Naruse, K. and Niki, H. and Nitasaka, E. and Obata, Y. and Okamoto, H. and Okuma, M. and Sato, K. and Serikawa, T. and Shiroishi, T. and Sugawara, H. and Urushibara, H. and Yamamoto, M. and Yaoita, Y. and Yoshiki, A. and Kohara, Y.},
	month = jan,
	year = {2010},
	pages = {D26--D32},
}

@article{bellgrove_fourier_2009,
	title = {Fourier transform infrared microspectroscopy as a tool to identify macroalgal propagules},
	volume = {45},
	issn = {00223646, 15298817},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1529-8817.2009.00684.x},
	doi = {10.1111/j.1529-8817.2009.00684.x},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {Journal of Phycology},
	author = {Bellgrove, Alecia and Kihara, Hiroshi and Iwata, Akira and Aoki, Masakazu N. and Heraud, Philip},
	month = jun,
	year = {2009},
	pages = {560--570},
}

@article{dahlberg_refining_2009,
	title = {Refining the \textit{{Ciona} intestinalis} {Model} of {Central} {Nervous} {System} {Regeneration}},
	volume = {4},
	issn = {1932-6203},
	url = {https://dx.plos.org/10.1371/journal.pone.0004458},
	doi = {10.1371/journal.pone.0004458},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {PLoS ONE},
	author = {Dahlberg, Carl and Auger, Hélène and Dupont, Sam and Sasakura, Yasunori and Thorndyke, Mike and Joly, Jean-Stéphane},
	editor = {Lopez-Schier, Hernan},
	month = feb,
	year = {2009},
	pages = {e4458},
}

@article{hasegawa_regional_2009,
	title = {Regional variation in shell utilization patterns of the hermit crab \textit{{Pagurus} filholi}},
	volume = {4},
	issn = {18808247},
	url = {https://ci.nii.ac.jp/naid/10025110617/},
	doi = {10.3800/pbr.4.72},
	number = {2},
	urldate = {2021-07-27},
	journal = {Plankton and Benthos Research},
	author = {Hasegawa, HIROMI and Wada, Satoshi and Aoki, Masakazu N. and Wada, Keiji},
	month = may,
	year = {2009},
	note = {Publisher: The Plankton Society of Japan, The Japanese Association of Benthology},
	keywords = {Hermit crab, Interpopulation difference, Niche overlap, Pagurus filholi, Shell resource availability, Shell utilization, wrongWada},
	pages = {72--76},
}

@article{horie_cell_2009,
	title = {Cell type and function of neurons in the ascidian nervous system: {Nervous} system of the ascidian larva},
	volume = {51},
	issn = {00121592},
	shorttitle = {Cell type and function of neurons in the ascidian nervous system},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1440-169X.2009.01105.x},
	doi = {10.1111/j.1440-169X.2009.01105.x},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {Development, Growth \& Differentiation},
	author = {Horie, Takeo and Nakagawa, Masashi and Sasakura, Yasunori and Kusakabe, Takehiro G.},
	month = mar,
	year = {2009},
	pages = {207--220},
}

@article{iguchi_vitro_2009,
	title = {\textit{{In} vitro} fertilization efficiency in coral \textit{{Acropora} digitifera}},
	volume = {17},
	issn = {0967-1994, 1469-8730},
	url = {https://www.cambridge.org/core/product/identifier/S096719940900519X/type/journal_article},
	doi = {10.1017/S096719940900519X},
	abstract = {Summary
            
              We performed fertilization experiments with
              Acropora digitifera
              , which is one of the dominant scleractinian corals in the Ryukyu Archipelago, Japan, to determine optimal conditions for
              in vitro
              manipulations. Our result suggests that conspecific fertilization is essentially complete within 30 min under the experimental conditions used in usual fertilization experiments in corals. Previous
              in vitro
              experiments (1 × 10
              5
              –10
              6
              sperm/ml, 4–8 h) are likely to have overestimated the efficiency of fertilization of
              Acropora
              spp. in the field. Therefore, we suggest that incubation periods shorter than those used to date (i.e. complete exclusion of sperm 1 h after their addition) would be more appropriate for the estimation of fertilization rates in corals.},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {Zygote},
	author = {Iguchi, Akira and Morita, Masaya and Nakajima, Yuichi and Nishikawa, Akira and Miller, David},
	month = aug,
	year = {2009},
	pages = {225--227},
}

Summary We performed fertilization experiments with Acropora digitifera , which is one of the dominant scleractinian corals in the Ryukyu Archipelago, Japan, to determine optimal conditions for in vitro manipulations. Our result suggests that conspecific fertilization is essentially complete within 30 min under the experimental conditions used in usual fertilization experiments in corals. Previous in vitro experiments (1 × 10 5 –10 6 sperm/ml, 4–8 h) are likely to have overestimated the efficiency of fertilization of Acropora spp. in the field. Therefore, we suggest that incubation periods shorter than those used to date (i.e. complete exclusion of sperm 1 h after their addition) would be more appropriate for the estimation of fertilization rates in corals.

@article{ikuta_ambulacrarian_2009,
	title = {Ambulacrarian prototypical {Hox} and {ParaHox} gene complements of the indirect-developing hemichordate \textit{{Balanoglossus} simodensis}},
	volume = {219},
	issn = {0949-944X, 1432-041X},
	url = {http://link.springer.com/10.1007/s00427-009-0298-4},
	doi = {10.1007/s00427-009-0298-4},
	language = {en},
	number = {7},
	urldate = {2021-07-27},
	journal = {Development Genes and Evolution},
	author = {Ikuta, Tetsuro and Miyamoto, Norio and Saito, Yasunori and Wada, Hiroshi and Satoh, Nori and Saiga, Hidetoshi},
	month = jul,
	year = {2009},
	keywords = {wrongWada},
	pages = {383--389},
}

@incollection{inaba_purification_2009,
	title = {Purification of {Dyneins} from {Sperm} {Flagella}},
	volume = {92},
	isbn = {978-0-12-374974-1},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0091679X08920045},
	language = {en},
	urldate = {2021-07-27},
	booktitle = {Methods in {Cell} {Biology}},
	publisher = {Elsevier},
	author = {Inaba, Kazuo and Mizuno, Katsutoshi},
	year = {2009},
	doi = {10.1016/S0091-679X(08)92004-5},
	pages = {49--63},
}

@incollection{borowitzka_abundance_2009,
	address = {Dordrecht},
	title = {Abundance of drifting seaweeds in eastern {East} {China} {Sea}},
	volume = {2},
	isbn = {978-1-4020-9618-1 978-1-4020-9619-8},
	url = {http://link.springer.com/10.1007/978-1-4020-9619-8_44},
	language = {en},
	urldate = {2021-07-27},
	booktitle = {Nineteenth {International} {Seaweed} {Symposium}},
	publisher = {Springer Netherlands},
	author = {Komatsu, Teruhisa and Matsunaga, Daisuke and Mikami, Atsuko and Sagawa, Tatsuyuki and Boisnier, Etienne and Tatsukawa, Kenichi and Aoki, Masakazu and Ajisaka, Tetsuro and Uwai, Shinya and Tanaka, Katsuhiko and Ishida, Kenichi and Tanoue, Hideaki and Sugimoto, Takashige},
	editor = {Borowitzka, Michael A. and Critchley, Alan T. and Kraan, Stefan and Peters, Akira and Sjøtun, Kjersti and Notoya, Masahiro},
	year = {2009},
	doi = {10.1007/978-1-4020-9619-8_44},
	pages = {351--359},
}

@article{komatsu_ecological_2009,
	title = {Ecological {Characteristics} of {Drifting} {Seaweed} {Rafts} {Composed} of {Sargassum} {Species}},
	volume = {46},
	issn = {1342-2758},
	url = {https://ci.nii.ac.jp/naid/110007611196},
	doi = {10.32142/engankaiyo.46.2_127},
	number = {2},
	urldate = {2021-07-27},
	journal = {Bulletin on Coastal Oceanography},
	author = {Komatsu, Teruhisa and Michida, Yutaka and Sugimoto, Takashige and Mikami, Atsuko and Ajisaka, Tetsuro and Uwai, Shinya and Aoki, Masakazu and Tanaka, Katsuhiko and Fukuda, Masahiro and Kokubu, Yutaka and Tanaka, Kiyoshi},
	year = {2009},
	note = {Publisher: Coastal Oceanography Research Committee, the Oceanographic Society of Japan},
	keywords = {ホンダワラ類, 分布, 東シナ海, 流れ藻, 生態, 移動},
	pages = {127--136},
}

@article{mizuno_novel_2009,
	title = {A novel neuronal calcium sensor family protein, calaxin, is a potential {Ca2}+-dependent regulator for the outer arm dynein of metazoan cilia and flagella},
	volume = {101},
	issn = {02484900},
	url = {http://doi.wiley.com/10.1042/BC20080032},
	doi = {10.1042/BC20080032},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Biology of the Cell},
	author = {Mizuno, Katsutoshi and Padma, Potturi and Konno, Aru and Satouh, Yuhkoh and Ogawa, Kazuo and Inaba, Kazuo},
	month = feb,
	year = {2009},
	pages = {91--103},
}

@article{morita_roles_2009,
	title = {Roles of {Calmodulin} and {Calcium}/{Calmodulin}-{Dependent} {Protein} {Kinase} in {Flagellar} {Motility} {Regulation} in the {Coral} \textit{{Acropora} {Digitifera}}},
	volume = {11},
	issn = {1436-2228, 1436-2236},
	url = {http://link.springer.com/10.1007/s10126-008-9127-4},
	doi = {10.1007/s10126-008-9127-4},
	language = {en},
	number = {1},
	urldate = {2021-07-27},
	journal = {Marine Biotechnology},
	author = {Morita, Masaya and Iguchi, Akira and Takemura, Akihiro},
	month = feb,
	year = {2009},
	pages = {118--123},
}

@article{morita_regulation_2009,
	title = {Regulation of sperm flagellar motility activation and chemotaxis caused by egg-derived substance(s) in sea cucumber},
	volume = {66},
	issn = {08861544, 10970169},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/cm.20343},
	doi = {10.1002/cm.20343},
	language = {en},
	number = {4},
	urldate = {2021-07-27},
	journal = {Cell Motility and the Cytoskeleton},
	author = {Morita, Masaya and Kitamura, Makoto and Nakajima, Ayako and Sri Susilo, Endang and Takemura, Akihiro and Okuno, Makoto},
	month = apr,
	year = {2009},
	pages = {202--214},
}

@article{morita_sperm_2009,
	title = {Sperm movement and morphology in a simultaneous hermaphroditic sea slug},
	volume = {53},
	issn = {0792-4259, 2157-0272},
	url = {http://www.tandfonline.com/doi/abs/10.1080/07924259.2009.9652291},
	doi = {10.1080/07924259.2009.9652291},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Invertebrate Reproduction \& Development},
	author = {Morita, Masaya and Seki, Satoko},
	month = jan,
	year = {2009},
	pages = {61--66},
}

@article{nakano_nervous_2009,
	title = {Nervous system development of two crinoid species, the sea lily \textit{{Metacrinus} rotundus} and the feather star \textit{{Oxycomanthus} japonicus}},
	volume = {219},
	issn = {0949-944X, 1432-041X},
	url = {http://link.springer.com/10.1007/s00427-010-0317-5},
	doi = {10.1007/s00427-010-0317-5},
	language = {en},
	number = {11-12},
	urldate = {2021-07-27},
	journal = {Development Genes and Evolution},
	author = {Nakano, Hiroaki and Nakajima, Yoko and Amemiya, Shonan},
	month = dec,
	year = {2009},
	pages = {565--576},
}

@article{nakayama-ishimura_delineating_2009,
	title = {Delineating metamorphic pathways in the ascidian \textit{{Ciona} intestinalis}},
	volume = {326},
	issn = {00121606},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0012160608013766},
	doi = {10.1016/j.ydbio.2008.11.026},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Developmental Biology},
	author = {Nakayama-Ishimura, Akie and Chambon, Jean-phillippe and Horie, Takeo and Satoh, Nori and Sasakura, Yasunori},
	month = feb,
	year = {2009},
	pages = {357--367},
}

@article{nomura_proteomic_2009,
	title = {Proteomic profiles of embryonic development in the ascidian \textit{{Ciona} intestinalis}},
	volume = {325},
	issn = {00121606},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0012160608013183},
	doi = {10.1016/j.ydbio.2008.10.038},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Developmental Biology},
	author = {Nomura, Mamoru and Nakajima, Ayako and Inaba, Kazuo},
	month = jan,
	year = {2009},
	pages = {468--481},
}

@article{palm_new_2009,
	title = {A new approach to visualize ecosystem health by using parasites},
	volume = {105},
	issn = {1432-1955},
	url = {https://doi.org/10.1007/s00436-009-1423-z},
	doi = {10.1007/s00436-009-1423-z},
	abstract = {A new approach is chosen to visualize ecosystem health by using parasite bioindicators in Segara Anakan Lagoon, a brackish water ecosystem at the southern Java coast, Indonesia. Three fish species (Mugil cephalus, Scatophagus argus, Epinephelus coioides) were collected in two different years and sampling sites and studied for ecto- and endoparasites. Additional data were taken for E. coioides from two further sites in Lampung Bay, Sumatra, and for E. fucoguttatus out of floating cages from a mariculture facility in the Thousand Islands, Jakarta Bay, North Java. The parasite fauna of fishes inside the lagoon was characterized by a high number of ecto- and a low number of endoparasites, the endoparasite diversity was relatively low and the prevalence of ectocommensalistic trichodinid ciliates was high. These parameters were chosen to indicate the biological conditions inside the lagoon. In E. coioides during rainy season, the prevalence of trichodinid ciliates was highest inside the lagoon (55\%) compared with 27\% in an open-net-cage mariculture and 5.7\% in free-living specimens in Lampung Bay. The endoparasite diversity (Shannon-Wiener) was lowest in fish from Segara Anakan lagoon (0.66) compared with fish from an open-net-cage mariculture (0.71) and free-living specimens (1.39). Results for E. fuscoguttatus from the mariculture site in the Thousand Islands, a relatively undisturbed marine environment, demonstrated high parasite diversity (1.58) in the cultivated fish, a high number of endoparasites, and no trichodinids. A star graph is used to visualize the parasite composition for the different fishes, sampling sites, and conditions, using (1) the prevalence of trichodinid ciliates, (2) the ecto/endoparasite ratio and (3) the endoparasite diversity as bioindicators. The application of the star graph is suggested to be a suitable tool to visualize and monitor environmental health under high parasite biodiversity conditions within tropical ecosystems. It can also support a better communication to stake holders and decision makers in order to monitor environmental impact and change.},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Parasitology Research},
	author = {Palm, H. W. and Rückert, S.},
	month = apr,
	year = {2009},
	pages = {539},
}

A new approach is chosen to visualize ecosystem health by using parasite bioindicators in Segara Anakan Lagoon, a brackish water ecosystem at the southern Java coast, Indonesia. Three fish species (Mugil cephalus, Scatophagus argus, Epinephelus coioides) were collected in two different years and sampling sites and studied for ecto- and endoparasites. Additional data were taken for E. coioides from two further sites in Lampung Bay, Sumatra, and for E. fucoguttatus out of floating cages from a mariculture facility in the Thousand Islands, Jakarta Bay, North Java. The parasite fauna of fishes inside the lagoon was characterized by a high number of ecto- and a low number of endoparasites, the endoparasite diversity was relatively low and the prevalence of ectocommensalistic trichodinid ciliates was high. These parameters were chosen to indicate the biological conditions inside the lagoon. In E. coioides during rainy season, the prevalence of trichodinid ciliates was highest inside the lagoon (55%) compared with 27% in an open-net-cage mariculture and 5.7% in free-living specimens in Lampung Bay. The endoparasite diversity (Shannon-Wiener) was lowest in fish from Segara Anakan lagoon (0.66) compared with fish from an open-net-cage mariculture (0.71) and free-living specimens (1.39). Results for E. fuscoguttatus from the mariculture site in the Thousand Islands, a relatively undisturbed marine environment, demonstrated high parasite diversity (1.58) in the cultivated fish, a high number of endoparasites, and no trichodinids. A star graph is used to visualize the parasite composition for the different fishes, sampling sites, and conditions, using (1) the prevalence of trichodinid ciliates, (2) the ecto/endoparasite ratio and (3) the endoparasite diversity as bioindicators. The application of the star graph is suggested to be a suitable tool to visualize and monitor environmental health under high parasite biodiversity conditions within tropical ecosystems. It can also support a better communication to stake holders and decision makers in order to monitor environmental impact and change.

@article{rueckert_metazoan_2009,
	title = {Metazoan fish parasites of {Segara} {Anakan} {Lagoon}, {Indonesia}, and their potential use as biological indicators},
	volume = {9},
	issn = {1436-378X},
	url = {https://doi.org/10.1007/s10113-008-0076-2},
	doi = {10.1007/s10113-008-0076-2},
	abstract = {The present study reports metazoan fish parasites from Segara Anakan, a brackish water lagoon located at the southern Java coast, Indonesia. Seven economically important marine fish species (Mugil cephalus, Siganus javus, Scatophagus argus, Caranx sexfasciatus, Lutjanus johnii, Eleutheronematetradactylum and Johnius coitor) were examined at two different sampling sites within the lagoon for the occurrence of metazoan parasites. A diverse parasite fauna was found, consisting of 43 species/taxa. Ectoparasites (31) were more abundant than endoparasites (12). The fish species J. coitor, M. cephalus and S. argus harboured the most diverse metazoan parasite fauna with 11, 13, and 16 different parasite species, respectively. Prevalence and intensity of infection for each parasite species/taxon is given, including short descriptions for rapid diagnosis. For the first time, we discuss the utilisation of the sampled fish parasites as biological indicator organisms for fish and environmental health within this tropical mangrove ecosystem. Ecto- versus endoparasite ratio and endoparasite diversity are suitable tools to describe the environmental health status at a tropical brackish water locality, and might be applied also for other tropical and possibly non-tropical marine ecosystems.},
	language = {en},
	number = {4},
	urldate = {2021-07-27},
	journal = {Regional Environmental Change},
	author = {Rueckert, Sonja and Hagen, Wilhelm and Yuniar, Asri T. and Palm, Harry W.},
	month = dec,
	year = {2009},
	pages = {315--328},
}

The present study reports metazoan fish parasites from Segara Anakan, a brackish water lagoon located at the southern Java coast, Indonesia. Seven economically important marine fish species (Mugil cephalus, Siganus javus, Scatophagus argus, Caranx sexfasciatus, Lutjanus johnii, Eleutheronematetradactylum and Johnius coitor) were examined at two different sampling sites within the lagoon for the occurrence of metazoan parasites. A diverse parasite fauna was found, consisting of 43 species/taxa. Ectoparasites (31) were more abundant than endoparasites (12). The fish species J. coitor, M. cephalus and S. argus harboured the most diverse metazoan parasite fauna with 11, 13, and 16 different parasite species, respectively. Prevalence and intensity of infection for each parasite species/taxon is given, including short descriptions for rapid diagnosis. For the first time, we discuss the utilisation of the sampled fish parasites as biological indicator organisms for fish and environmental health within this tropical mangrove ecosystem. Ecto- versus endoparasite ratio and endoparasite diversity are suitable tools to describe the environmental health status at a tropical brackish water locality, and might be applied also for other tropical and possibly non-tropical marine ecosystems.

@article{rueckert_phylogenetic_2009,
	title = {Phylogenetic position and description of \textit{{Rhytidocystis} cyamus} sp. n. ({Apicomplexa}, {Rhytidocystidae}): a novel intestinal parasite of the north-eastern {Pacific} ‘stink worm’ ({Polychaeta}, {Opheliidae}, \textit{{Travisia} pupa})},
	volume = {39},
	issn = {1867-1624},
	shorttitle = {Phylogenetic position and description of {Rhytidocystis} cyamus sp. n. ({Apicomplexa}, {Rhytidocystidae})},
	url = {https://doi.org/10.1007/s12526-009-0014-7},
	doi = {10.1007/s12526-009-0014-7},
	abstract = {A new Rhytidocystis species is described from the north-eastern Pacific Coast. Trophozoites of R. cyamus sp. n. were isolated from the intestines of the opheliid polychaete Travisia pupa, collected from mud dredged at a depth of 80 m. The trophozoites of R. cyamus sp. n. were relatively small (40–64 μm long, 27–30 μm wide) and bean-shaped with a centrally located nucleus. The trophozoite surface was inscribed by 10–12 longitudinal rows of short transverse folds and less conspicuous grooves with an irregular pattern. Micropores were observed in association with the transverse folds. A mucron or apical complex was not observed with either light or scanning electron microscopy. The trophozoites did not show any degree of motility. The SSU rDNA sequence obtained from R. cyamus sp. n. clustered strongly with R. polygordiae within the rhytidocystid clade. Although the precise phylogenetic position of the rhytidocystid clade within the Apicomplexa remains uncertain, the rhytidocystid sequences diverged with a weak affinity to a terrestrial clade containing cryptosporidians, neogregarines and monocystids.},
	language = {en},
	number = {4},
	urldate = {2021-07-27},
	journal = {Marine Biodiversity},
	author = {Rueckert, Sonja and Leander, Brian S.},
	month = jun,
	year = {2009},
	pages = {227},
}

A new Rhytidocystis species is described from the north-eastern Pacific Coast. Trophozoites of R. cyamus sp. n. were isolated from the intestines of the opheliid polychaete Travisia pupa, collected from mud dredged at a depth of 80 m. The trophozoites of R. cyamus sp. n. were relatively small (40–64 μm long, 27–30 μm wide) and bean-shaped with a centrally located nucleus. The trophozoite surface was inscribed by 10–12 longitudinal rows of short transverse folds and less conspicuous grooves with an irregular pattern. Micropores were observed in association with the transverse folds. A mucron or apical complex was not observed with either light or scanning electron microscopy. The trophozoites did not show any degree of motility. The SSU rDNA sequence obtained from R. cyamus sp. n. clustered strongly with R. polygordiae within the rhytidocystid clade. Although the precise phylogenetic position of the rhytidocystid clade within the Apicomplexa remains uncertain, the rhytidocystid sequences diverged with a weak affinity to a terrestrial clade containing cryptosporidians, neogregarines and monocystids.

@article{rueckert_molecular_2009,
	title = {Molecular {Phylogeny} and {Surface} {Morphology} of {Marine} {Archigregarines} ({Apicomplexa}), \textit{{Selenidium}} spp., \textit{{Filipodium} phascolosomae} n. sp., and \textit{{Platyproteum}} n. g. and comb. from {North}-{Eastern} {Pacific} {Peanut} {Worms} ({Sipuncula})},
	volume = {56},
	issn = {10665234, 15507408},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1550-7408.2009.00422.x},
	doi = {10.1111/j.1550-7408.2009.00422.x},
	language = {en},
	number = {5},
	urldate = {2021-07-27},
	journal = {Journal of Eukaryotic Microbiology},
	author = {Rueckert, Sonja and Leander, Brian S.},
	month = sep,
	year = {2009},
	pages = {428--439},
}

@article{ruckert_transmission_2009,
	title = {Transmission of fish parasites into grouper mariculture ({Serranidae}: \textit{{Epinephelus} coioides} ({Hamilton}, 1822)) in {Lampung} {Bay}, {Indonesia}},
	volume = {104},
	issn = {0932-0113, 1432-1955},
	shorttitle = {Transmission of fish parasites into grouper mariculture ({Serranidae}},
	url = {http://link.springer.com/10.1007/s00436-008-1226-7},
	doi = {10.1007/s00436-008-1226-7},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {Parasitology Research},
	author = {Rückert, Sonja and Klimpel, Sven and Al-Quraishy, Saleh and Mehlhorn, Heinz and Palm, Harry W.},
	month = feb,
	year = {2009},
	pages = {523--532},
}

@incollection{john_wiley__sons_ltd_regulatory_2009,
	address = {Chichester, UK},
	title = {Regulatory {Genes} in {Ancestral} {Chordates}},
	isbn = {978-0-470-01617-6 978-0-470-01590-2},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/9780470015902.a0021774},
	language = {en},
	urldate = {2021-07-27},
	booktitle = {Encyclopedia of {Life} {Sciences}},
	publisher = {John Wiley \& Sons, Ltd},
	author = {Sasakura, Yasunori},
	editor = {{John Wiley \& Sons, Ltd}},
	month = sep,
	year = {2009},
	doi = {10.1002/9780470015902.a0021774},
	pages = {a0021774},
}

@article{sasakura_ciona_2009,
	title = {\textit{{Ciona} intestinalis} and \textit{{Oxycomanthus} japonicus}, {Representatives} of {Marine} {Invertebrates}},
	volume = {58},
	issn = {1341-1357, 1881-7122},
	url = {http://www.jstage.jst.go.jp/article/expanim/58/5/58_5_459/_article},
	doi = {10.1538/expanim.58.459},
	language = {en},
	number = {5},
	urldate = {2021-07-27},
	journal = {Experimental Animals},
	author = {Sasakura, Yasunori and Inaba, Kazuo and Satoh, Nori and Kondo, Mariko and Akasaka, Koji},
	year = {2009},
	pages = {459--469},
}

@article{satouh_proteomic_2009,
	title = {Proteomic characterization of sperm radial spokes identifies a novel spoke protein with an ubiquitin domain},
	volume = {583},
	issn = {00145793},
	url = {http://doi.wiley.com/10.1016/j.febslet.2009.06.016},
	doi = {10.1016/j.febslet.2009.06.016},
	language = {en},
	number = {13},
	urldate = {2021-07-27},
	journal = {FEBS Letters},
	author = {Satouh, Yuhkoh and Inaba, Kazuo},
	month = jul,
	year = {2009},
	pages = {2201--2207},
}

@article{wei_sea_2009,
	title = {The sea urchin animal pole domain is a {Six3}-dependent neurogenic patterning center},
	volume = {136},
	issn = {1477-9129, 0950-1991},
	url = {https://journals.biologists.com/dev/article/136/7/1179/65463/The-sea-urchin-animal-pole-domain-is-a-Six3},
	doi = {10.1242/dev.032300},
	abstract = {Two major signaling centers have been shown to control patterning of sea urchin embryos. Canonical Wnt signaling in vegetal blastomeres and Nodal signaling in presumptive oral ectoderm are necessary and sufficient to initiate patterning along the primary and secondary axes, respectively. Here we define and characterize a third patterning center, the animal pole domain(APD), which contains neurogenic ectoderm, and can oppose Wnt and Nodal signaling. The regulatory influence of the APD is normally restricted to the animal pole region, but can operate in most cells of the embryo because, in the absence of Wnt and Nodal, the APD expands throughout the embryo. We have identified many constituent APD regulatory genes expressed in the early blastula and have shown that expression of most of them requires Six3 function. Furthermore, Six3 is necessary for the differentiation of diverse cell types in the APD, including the neurogenic animal plate and immediately flanking ectoderm, indicating that it functions at or near the top of several APD gene regulatory networks. Remarkably, it is also sufficient to respecify the fates of cells in the rest of the embryo, generating an embryo consisting of a greatly expanded, but correctly patterned, APD. A fraction of the large group of Six3-dependent regulatory proteins are orthologous to those expressed in the vertebrate forebrain, suggesting that they controlled formation of the early neurogenic domain in the common deuterostome ancestor of echinoderms and vertebrates.},
	language = {en},
	number = {7},
	urldate = {2021-07-27},
	journal = {Development},
	author = {Wei, Zheng and Yaguchi, Junko and Yaguchi, Shunsuke and Angerer, Robert C. and Angerer, Lynne M.},
	month = apr,
	year = {2009},
	pages = {1179--1189},
}

Two major signaling centers have been shown to control patterning of sea urchin embryos. Canonical Wnt signaling in vegetal blastomeres and Nodal signaling in presumptive oral ectoderm are necessary and sufficient to initiate patterning along the primary and secondary axes, respectively. Here we define and characterize a third patterning center, the animal pole domain(APD), which contains neurogenic ectoderm, and can oppose Wnt and Nodal signaling. The regulatory influence of the APD is normally restricted to the animal pole region, but can operate in most cells of the embryo because, in the absence of Wnt and Nodal, the APD expands throughout the embryo. We have identified many constituent APD regulatory genes expressed in the early blastula and have shown that expression of most of them requires Six3 function. Furthermore, Six3 is necessary for the differentiation of diverse cell types in the APD, including the neurogenic animal plate and immediately flanking ectoderm, indicating that it functions at or near the top of several APD gene regulatory networks. Remarkably, it is also sufficient to respecify the fates of cells in the rest of the embryo, generating an embryo consisting of a greatly expanded, but correctly patterned, APD. A fraction of the large group of Six3-dependent regulatory proteins are orthologous to those expressed in the vertebrate forebrain, suggesting that they controlled formation of the early neurogenic domain in the common deuterostome ancestor of echinoderms and vertebrates.

@article{__2009-3,
	title = {衛星リモートセンシングによる藻場マッピング (総特集 藻場研究の今--分布・生態から磯焼け対策・利用まで)},
	volume = {41},
	issn = {09162011},
	url = {https://ci.nii.ac.jp/naid/40016878101},
	abstract = {衛星リモートセンシングによる藻場マッピング (総特集 藻場研究の今--分布・生態から磯焼け対策・利用まで) 佐川 龍之 , 小松 輝久 , 三上 温子 海洋 41(11), 605-610, 2009-11},
	language = {en},
	number = {11},
	urldate = {2021-07-27},
	journal = {海洋},
	author = {{佐川龍之} and {小松輝久} and {三上}},
	month = nov,
	year = {2009},
	note = {Publisher: 海洋出版},
	pages = {605--610},
}

衛星リモートセンシングによる藻場マッピング (総特集 藻場研究の今–分布・生態から磯焼け対策・利用まで) 佐川 龍之 , 小松 輝久 , 三上 温子 海洋 41(11), 605-610, 2009-11

@article{__2009-1,
	title = {カタユウレイボヤの飼育},
	volume = {26},
	issn = {09163786},
	url = {https://ci.nii.ac.jp/naid/10025617676},
	abstract = {カタユウレイボヤの飼育 堀江 健生 , 笹倉 靖徳 比較生理生化学 26(3), 117-120, 2009-08-20},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {比較生理生化学},
	author = {{堀江健生} and {笹倉靖徳}},
	month = aug,
	year = {2009},
	note = {Publisher: 日本比較生理生化学会},
	pages = {117--120},
}

カタユウレイボヤの飼育 堀江 健生 , 笹倉 靖徳 比較生理生化学 26(3), 117-120, 2009-08-20

@article{__2009,
	title = {藻場研究の今−分布・生態から磯焼け対策・利用まで−},
	volume = {41},
	journal = {月刊海洋},
	author = {{小松輝久} and {藤田大介} and {青木優和}},
	year = {2009},
	pages = {593--597},
}

@article{__2009-2,
	title = {鞭毛・繊毛の構造と運動メカニズム (特集 動くだけではない!?繊毛の多彩な機能)},
	volume = {28},
	issn = {02873796},
	url = {https://ci.nii.ac.jp/naid/40016838933},
	number = {10},
	urldate = {2021-07-27},
	journal = {Cell technology.},
	author = {{稲葉一男}},
	month = oct,
	year = {2009},
	note = {Publisher: 秀潤社},
	keywords = {精子, 軸糸ダイニン, 鞭毛繊毛},
	pages = {991--997},
}

@article{__2009-4,
	title = {流れ藻葉上動物群集の形成パターン},
	volume = {46},
	issn = {1342-2758},
	url = {https://jglobal.jst.go.jp/detail?JGLOBAL_ID=200902256854465550},
	abstract = {文献「流れ藻葉上動物群集の形成パターン」の詳細情報です。J-GLOBAL 科学技術総合リンクセンターは研究者、文献、特許などの情報をつなぐことで、異分野の知や意外な発見などを支援する新しいサービスです。またJST内外の良質なコンテンツへ案内いたします。},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {沿岸海洋研究},
	author = {{青木優和} and {田中克彦} and {熊谷直喜} and {伊藤敦} and Subhan, Beginer and {小松輝久}},
	year = {2009},
	pages = {137--140},
}

文献「流れ藻葉上動物群集の形成パターン」の詳細情報です。J-GLOBAL 科学技術総合リンクセンターは研究者、文献、特許などの情報をつなぐことで、異分野の知や意外な発見などを支援する新しいサービスです。またJST内外の良質なコンテンツへ案内いたします。

@article{bellgrove_variation_2008,
	title = {Variation in gametophyte dominance in populations of \textit{{Chondrus} verrucosus} ({Gigartinaceae}, {Rhodophyta})},
	volume = {56},
	issn = {13220829, 14401835},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1440-1835.2008.00506.x},
	doi = {10.1111/j.1440-1835.2008.00506.x},
	language = {en},
	number = {4},
	urldate = {2021-07-27},
	journal = {Phycological Research},
	author = {Bellgrove, Alecia and Aoki, Masakazu N.},
	month = dec,
	year = {2008},
	pages = {246--254},
}

@article{holland_amphioxus_2008,
	title = {The amphioxus genome illuminates vertebrate origins and cephalochordate biology},
	volume = {18},
	issn = {1088-9051},
	url = {http://www.genome.org/cgi/doi/10.1101/gr.073676.107},
	doi = {10.1101/gr.073676.107},
	language = {en},
	number = {7},
	urldate = {2021-07-27},
	journal = {Genome Research},
	author = {Holland, L. Z. and Albalat, R. and Azumi, K. and Benito-Gutierrez, E. and Blow, M. J. and Bronner-Fraser, M. and Brunet, F. and Butts, T. and Candiani, S. and Dishaw, L. J. and Ferrier, D. E.K. and Garcia-Fernandez, J. and Gibson-Brown, J. J. and Gissi, C. and Godzik, A. and Hallbook, F. and Hirose, D. and Hosomichi, K. and Ikuta, T. and Inoko, H. and Kasahara, M. and Kasamatsu, J. and Kawashima, T. and Kimura, A. and Kobayashi, M. and Kozmik, Z. and Kubokawa, K. and Laudet, V. and Litman, G. W. and McHardy, A. C. and Meulemans, D. and Nonaka, M. and Olinski, R. P. and Pancer, Z. and Pennacchio, L. A. and Pestarino, M. and Rast, J. P. and Rigoutsos, I. and Robinson-Rechavi, M. and Roch, G. and Saiga, H. and Sasakura, Y. and Satake, M. and Satou, Y. and Schubert, M. and Sherwood, N. and Shiina, T. and Takatori, N. and Tello, J. and Vopalensky, P. and Wada, S. and Xu, A. and Ye, Y. and Yoshida, K. and Yoshizaki, F. and Yu, J.-K. and Zhang, Q. and Zmasek, C. M. and de Jong, P. J. and Osoegawa, K. and Putnam, N. H. and Rokhsar, D. S. and Satoh, N. and Holland, P. W.H.},
	month = jul,
	year = {2008},
	keywords = {wrongWada},
	pages = {1100--1111},
}

@article{hozumi_molecular_2008,
	title = {Molecular characterization of axonemal proteins and signaling molecules responsible for chemoattractant-induced sperm activation in \textit{{Ciona} intestinalis}},
	volume = {65},
	issn = {08861544, 10970169},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/cm.20258},
	doi = {10.1002/cm.20258},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {Cell Motility and the Cytoskeleton},
	author = {Hozumi, Akiko and Padma, Potturi and Toda, Tosifusa and Ide, Hiroyuki and Inaba, Kazuo},
	month = mar,
	year = {2008},
	pages = {249--267},
}

@article{ito_phylogenetic_2008,
	title = {Phylogenetic {Analysis} of {Caprellid} and {Corophioid} {Amphipods} ({Crustacea}) {Based} on the {18S} {rRNA} {Gene}, {With} {Special} {Emphasis} on the {Phylogenetic} {Position} of {Phtisicidae}},
	volume = {214},
	issn = {0006-3185, 1939-8697},
	url = {https://www.journals.uchicago.edu/doi/10.2307/25066674},
	doi = {10.2307/25066674},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {The Biological Bulletin},
	author = {Ito, Atsushi and Wada, Hiroshi and Aoki, Masakazu N.},
	month = apr,
	year = {2008},
	keywords = {wrongWada},
	pages = {176--183},
}

@article{kondoh_valosin-containing_2008,
	title = {Valosin-containing protein/p97 interacts with sperm-activating and sperm-attracting factor ({SAAF}) in the ascidian egg and modulates sperm-attracting activity},
	volume = {50},
	issn = {00121592, 1440169X},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1440-169X.2008.01064.x},
	doi = {10.1111/j.1440-169X.2008.01064.x},
	language = {en},
	number = {8},
	urldate = {2021-07-27},
	journal = {Development, Growth \& Differentiation},
	author = {Kondoh, Eri and Konno, Aru and Inaba, Kazuo and Oishi, Tohru and Murata, Michio and Yoshida, Manabu},
	month = oct,
	year = {2008},
	pages = {665--673},
}

@article{kowalski_prostaglandins_2008,
	title = {Prostaglandins in rainbow trout ( \textit{{Oncorhynchus} mykiss} {Walbaum}, 1792) sperm biology - searching for answers},
	volume = {24},
	issn = {01758659, 14390426},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1439-0426.2008.01147.x},
	doi = {10.1111/j.1439-0426.2008.01147.x},
	language = {en},
	number = {4},
	urldate = {2021-07-27},
	journal = {Journal of Applied Ichthyology},
	author = {Kowalski, R. K. and Shiba, K. and Yoshida, M. and Glogowski, J.},
	month = aug,
	year = {2008},
	pages = {487--491},
}

@article{miyamoto_overview_2008,
	title = {An overview of taxonomical study of enteropneusts in {Japan}},
	volume = {25},
	issn = {1342-2367},
	url = {https://ci.nii.ac.jp/naid/110008511446},
	doi = {10.19004/taxa.25.0_29},
	number = {0},
	urldate = {2021-07-27},
	journal = {Taxa, Proceedings of the Japanese Society of Systematic Zoology},
	author = {Miyamoto, Norio and Saito, Yasunori},
	year = {2008},
	note = {Publisher: The Japanese Society of Systematic Zoology},
	keywords = {Enteropneusta, Hemichordata, Japan, acorn worm, fauna, taxonomy},
	pages = {29--35},
}

@inproceedings{oku_how_2008,
	address = {Vancouver, BC},
	title = {How to track spermatozoa using high-speed visual feedback},
	isbn = {978-1-4244-1814-5},
	url = {http://ieeexplore.ieee.org/document/4649106/},
	doi = {10.1109/IEMBS.2008.4649106},
	urldate = {2021-07-27},
	booktitle = {2008 30th {Annual} {International} {Conference} of the {IEEE} {Engineering} in {Medicine} and {Biology} {Society}},
	publisher = {IEEE},
	author = {Oku, Hiromasa and Ishikawa, Masatoshi and Ogawa, Naoko and Shiba, Kogiku and Yoshida, Manabu},
	month = aug,
	year = {2008},
	pages = {125--128},
}

@article{sardet_euro_2008,
	title = {Euro chordates: {Ascidian} community swims ahead. {The} 4th {International} {Tunicate} meeting in {Villefranche} sur {Mer}},
	volume = {237},
	issn = {10588388, 10970177},
	shorttitle = {Euro chordates},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/dvdy.21487},
	doi = {10.1002/dvdy.21487},
	language = {en},
	number = {4},
	urldate = {2021-07-27},
	journal = {Developmental Dynamics},
	author = {Sardet, Christian and Swalla, Billie J. and Satoh, Nori and Sasakura, Yasunori and Branno, Margherita and Thompson, Eric M. and Levine, Mike and Nishida, Hiroki},
	month = apr,
	year = {2008},
	pages = {1207--1213},
}

@article{sasakura_enhancer_2008,
	title = {Enhancer detection in the ascidian \textit{{Ciona} intestinalis}with transposase-expressing lines of \textit{{Minos}}},
	volume = {237},
	issn = {10588388, 10970177},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/dvdy.21333},
	doi = {10.1002/dvdy.21333},
	language = {en},
	number = {1},
	urldate = {2021-07-27},
	journal = {Developmental Dynamics},
	author = {Sasakura, Yasunori and Konno, Aru and Mizuno, Katsutoshi and Satoh, Nori and Inaba, Kazuo},
	month = jan,
	year = {2008},
	pages = {39--50},
}

@article{satou_improved_2008,
	title = {Improved genome assembly and evidence-based global gene model set for the chordate \textit{{Ciona} intestinalis}: new insight into intron and operon populations},
	volume = {9},
	issn = {1465-6906},
	shorttitle = {Improved genome assembly and evidence-based global gene model set for the chordate {Ciona} intestinalis},
	url = {http://genomebiology.biomedcentral.com/articles/10.1186/gb-2008-9-10-r152},
	doi = {10.1186/gb-2008-9-10-r152},
	language = {en},
	number = {10},
	urldate = {2021-07-27},
	journal = {Genome Biology},
	author = {Satou, Yutaka and Mineta, Katsuhiko and Ogasawara, Michio and Sasakura, Yasunori and Shoguchi, Eiichi and Ueno, Keisuke and Yamada, Lixy and Matsumoto, Jun and Wasserscheid, Jessica and Dewar, Ken and Wiley, Graham B and Macmil, Simone L and Roe, Bruce A and Zeller, Robert W and Hastings, Kenneth EM and Lemaire, Patrick and Lindquist, Erika and Endo, Toshinori and Hotta, Kohji and Inaba, Kazuo},
	year = {2008},
	pages = {R152},
}

@article{satou_regulatory_2008,
	title = {Regulatory genes in the ancestral chordate genomes},
	volume = {218},
	issn = {0949-944X, 1432-041X},
	url = {http://link.springer.com/10.1007/s00427-008-0219-y},
	doi = {10.1007/s00427-008-0219-y},
	language = {en},
	number = {11-12},
	urldate = {2021-07-27},
	journal = {Development Genes and Evolution},
	author = {Satou, Yutaka and Wada, Shuichi and Sasakura, Yasunori and Satoh, Nori},
	month = dec,
	year = {2008},
	keywords = {wrongWada},
	pages = {715--721},
}

@article{shiba_ca2_2008,
	title = {Ca2+ bursts occur around a local minimal concentration of attractant and trigger sperm chemotactic response},
	volume = {105},
	copyright = {© 2008 by The National Academy of Sciences of the USA},
	issn = {0027-8424, 1091-6490},
	url = {https://www.pnas.org/content/105/49/19312},
	doi = {10.1073/pnas.0808580105},
	abstract = {Ca2+ is known to have important roles in sperm chemotaxis, although the relationship between intracellular Ca2+ concentration ([Ca2+]i) and modulation of the swimming and chemotactic behavior of spermatozoa has not been elucidated. Using a high-speed Ca2+ imaging system, we examined the chemotactic behavior and [Ca2+]i in individual ascidian sperm cells exhibiting chemotactic responses toward sperm activating and attracting factor (SAAF), a chemoattractant released by eggs. In this study, we found that transient [Ca2+]i increased in the flagellum (Ca2+ bursts) concomitantly with a change in the swimming direction in an SAAF gradient field. During the initial phase of the Ca2+ bursts, the flagellum of the spermatozoon exhibited highly asymmetric waveforms enabling the quick turning of the swimming path. However, the flagellum subsequently changed to symmetric beating, causing the spermatozoon to swim straight. Interestingly, during such responses, [Ca2+]i remained higher than the basal level, indicating that the series of responses was not simply determined by Ca2+ concentrations. Also, we found that Ca2+ bursts were consistently evoked at points at which the spermatozoon attained around a temporally minimal value for a given SAAF concentration. We concluded that Ca2+ bursts induced around a local minimal SAAF concentration trigger a sequence of flagellar responses comprising quick turning followed by straight swimming to direct spermatozoa efficiently toward eggs.},
	language = {en},
	number = {49},
	urldate = {2021-07-27},
	journal = {Proceedings of the National Academy of Sciences},
	author = {Shiba, Kogiku and Baba, Shoji A. and Inoue, Takafumi and Yoshida, Manabu},
	month = dec,
	year = {2008},
	pmid = {19047630},
	note = {Publisher: National Academy of Sciences
Section: Biological Sciences},
	keywords = {ascidian, calcium, chemotaxis, fertilization, flagella},
	pages = {19312--19317},
}

Ca2+ is known to have important roles in sperm chemotaxis, although the relationship between intracellular Ca2+ concentration ([Ca2+]i) and modulation of the swimming and chemotactic behavior of spermatozoa has not been elucidated. Using a high-speed Ca2+ imaging system, we examined the chemotactic behavior and [Ca2+]i in individual ascidian sperm cells exhibiting chemotactic responses toward sperm activating and attracting factor (SAAF), a chemoattractant released by eggs. In this study, we found that transient [Ca2+]i increased in the flagellum (Ca2+ bursts) concomitantly with a change in the swimming direction in an SAAF gradient field. During the initial phase of the Ca2+ bursts, the flagellum of the spermatozoon exhibited highly asymmetric waveforms enabling the quick turning of the swimming path. However, the flagellum subsequently changed to symmetric beating, causing the spermatozoon to swim straight. Interestingly, during such responses, [Ca2+]i remained higher than the basal level, indicating that the series of responses was not simply determined by Ca2+ concentrations. Also, we found that Ca2+ bursts were consistently evoked at points at which the spermatozoon attained around a temporally minimal value for a given SAAF concentration. We concluded that Ca2+ bursts induced around a local minimal SAAF concentration trigger a sequence of flagellar responses comprising quick turning followed by straight swimming to direct spermatozoa efficiently toward eggs.

@article{wada_bioavailability_2008,
	title = {Bioavailability of macroalgal dissolved organic matter in seawater},
	volume = {370},
	issn = {0171-8630, 1616-1599},
	url = {http://www.int-res.com/abstracts/meps/v370/p33-44/},
	doi = {10.3354/meps07645},
	language = {en},
	urldate = {2021-07-27},
	journal = {Marine Ecology Progress Series},
	author = {Wada, S and Aoki, Mn and Mikami, A and Komatsu, T and Tsuchiya, Y and Sato, T and Shinagawa, H and Hama, T},
	month = oct,
	year = {2008},
	note = {Wada},
	pages = {33--44},
}

@article{yaguchi_wnt-foxq2-nodal_2008,
	title = {A {Wnt}-{FoxQ2}-{Nodal} {Pathway} {Links} {Primary} and {Secondary} {Axis} {Specification} in {Sea} {Urchin} {Embryos}},
	volume = {14},
	issn = {15345807},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1534580707003905},
	doi = {10.1016/j.devcel.2007.10.012},
	language = {en},
	number = {1},
	urldate = {2021-07-27},
	journal = {Developmental Cell},
	author = {Yaguchi, Shunsuke and Yaguchi, Junko and Angerer, Robert C. and Angerer, Lynne M.},
	month = jan,
	year = {2008},
	pages = {97--107},
}

@book{yoshida_dna_2008,
	address = {New York},
	title = {{DNA} transposable elements research},
	isbn = {978-1-60456-531-7},
	language = {English},
	publisher = {Nova Science},
	author = {Yoshida, Kaito},
	year = {2008},
	note = {OCLC: 263451637},
}

@article{yoshida_ascidian_2008,
	title = {Ascidian sperm activating and attracting factor: {Importance} of sulfate groups for the activities and implication of its putative receptor},
	volume = {582},
	issn = {0014-5793},
	shorttitle = {Ascidian sperm activating and attracting factor},
	url = {https://www.sciencedirect.com/science/article/pii/S0014579308007382},
	doi = {10.1016/j.febslet.2008.09.006},
	abstract = {The sperm activating and attracting factor (SAAF) from the eggs of the ascidian Ciona intestinalis was identified as the sulfated polyhydroxysterol,3α,4β,7α,26-tetrahydroxy-5α-cholestane-3,26-disulfate. We present a functional analysis of SAAF derivatives that reveals the roles of the various SAAF functional groups. Optical isomerism does not affect SAAF activities. Hydrolysis on one side, i.e. at the sulfate groups of SAAF, decreases the sperm-activating and sperm-attracting activities, while hydrolysis on both sides resulted in the loss of both activities. Biotinylated-SAAF lost its sperm-activating ability, but retained sperm-binding and chemotactic abilities. Thus, the sulfate groups of SAAF are responsible for these activities.},
	language = {en},
	number = {23},
	urldate = {2021-07-27},
	journal = {FEBS Letters},
	author = {Yoshida, Manabu and Shiba, Kogiku and Yoshida, Kaoru and Tsuchikawa, Hiroshi and Ootou, Ouichirou and Oishi, Toru and Murata, Michio},
	month = oct,
	year = {2008},
	keywords = {Ascidian, Chemoattractant, Fertilization, Sperm chemotaxis, Sulfated polyhydroxysterol},
	pages = {3429--3433},
}

The sperm activating and attracting factor (SAAF) from the eggs of the ascidian Ciona intestinalis was identified as the sulfated polyhydroxysterol,3α,4β,7α,26-tetrahydroxy-5α-cholestane-3,26-disulfate. We present a functional analysis of SAAF derivatives that reveals the roles of the various SAAF functional groups. Optical isomerism does not affect SAAF activities. Hydrolysis on one side, i.e. at the sulfate groups of SAAF, decreases the sperm-activating and sperm-attracting activities, while hydrolysis on both sides resulted in the loss of both activities. Biotinylated-SAAF lost its sperm-activating ability, but retained sperm-binding and chemotactic abilities. Thus, the sulfate groups of SAAF are responsible for these activities.

@article{_consecutive_2008,
	title = {Consecutive daily samplings of aggregations of the sea skater \textit{{Halobates} japonicus} {Esaki} ({Hemiptera}: {Gerridae})},
	issn = {02860643},
	shorttitle = {Consecutive daily samplings of aggregations of the sea skater {Halobates} japonicus {Esaki} ({Hemiptera}},
	url = {https://ci.nii.ac.jp/naid/110007126339},
	number = {25},
	urldate = {2021-07-27},
	journal = {The Journal of Morioka College},
	author = {井川, 輝美 and 渡辺, 守 and 青木, 優和 and 岡部, 秀彦 and Terumi, Ikawa and Mamoru, Watanabe and Masakazu, Aoki and Hidehiko, Okabe},
	month = mar,
	year = {2008},
	note = {Publisher: 盛岡大学},
	pages = {31--37},
}

@article{_nbrp_2008,
	title = {{NBRP}（ナショナルバイオリソースプロジェクト）紹介 カタユウレイボヤ・ニッポンウミシダ　－海産無脊椎動物のリソース展開－},
	volume = {4-4},
	journal = {季刊　Biophilia},
	author = {{笹倉靖徳} and {稲葉一男} and {佐藤矩行} and {赤坂甲治}},
	year = {2008},
	pages = {16},
}

@article{awazu_high-throughput_2007,
	title = {High-throughput enhancer trap by remobilization of transposon \textit{{Minos}} in \textit{{Ciona} intestinalis}},
	volume = {45},
	issn = {1526954X, 1526968X},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/dvg.20290},
	doi = {10.1002/dvg.20290},
	language = {en},
	number = {5},
	urldate = {2021-07-27},
	journal = {genesis},
	author = {Awazu, Satoko and Matsuoka, Terumi and Inaba, Kazuo and Satoh, Nori and Sasakura, Yasunori},
	month = may,
	year = {2007},
	pages = {307--317},
}

@article{fiordelisio_immunoreactivity_2007,
	title = {Immunoreactivity to {Neurofilaments} in the {Rodent} {Anterior} {Pituitary} is {Associated} with the {Expression} of α{1A} {Protein} {Subunits} of {Voltage}-{Gated} {Ca2}+ {Channels}},
	volume = {19},
	issn = {1365-2826},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1365-2826.2007.01596.x},
	doi = {10.1111/j.1365-2826.2007.01596.x},
	abstract = {We recently reported that rodent anterior pituitary (AP) cells (with the exception of corticotrophs and melanotrophs) express neuronal markers, including 68-kDa neurofilaments (NF68) in an oestrogen-dependent manner. The functional significance of neurofilament (NF) expression in the AP is unknown, but recent data in myelinated nerve fibres from NF-null mice suggest that NFs can regulate ion channel function. Because Ca2+ influx through voltage-gated Ca2+ channels is required for hormone secretion in AP cells, and oestrogen regulates the expression of Ca2+ channels in AP cells, the present study examined the expression of α1 subunits of voltage gated Ca2+ channels in relation to that of NF68. Using quantitative immunofluorescence, we demonstrate that α1C and α1D subunits are abundantly expressed in female AP cells, α1A subunits are moderately expressed, and α1G and α1B subunits are expressed at the lowest levels. Double-immunostaining showed that NF68 expression is not correlated with that of α1C, α1D or α1B. Expression of α1G and NF68 appear to be mutually exclusive from each other. Moreover, α1A subunit and NF68 expression are significantly correlated and α1A immunoreactivity is sexually dimorphic (i.e. low in males and high in females) and its levels of expression vary during the oestrous cycle, similar to NF68. Finally, ω-agatoxin IVA, a specific blocker of P/Q type Ca2+ currents that are a result of the activity of α1A subunits, inhibited to a greater extent spontaneous [Ca2+]i fluctuations in AP cells from females in oestrous and dioestrous, whereas cells from females in pro-oestrous and males were less affected by this toxin. These results suggest a preferential participation of P/Q-type Ca2+ channels and hence α1A subunits, in regulating spontaneous Ca2+ transients in AP cells under conditions where the proportion of NF68-expressing cells is high. It remains to be determined whether the expression of NF68 affects that of α1A Ca2+ channel subunits or vice versa.},
	language = {en},
	number = {11},
	urldate = {2021-07-27},
	journal = {Journal of Neuroendocrinology},
	author = {Fiordelisio, T. and Jiménez, N. and Baba, S. and Shiba, K. and Hernández-Cruz, A.},
	year = {2007},
	note = {\_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1111/j.1365-2826.2007.01596.x},
	keywords = {anterior pituitary subpopulations, neurofilament, oestrogen, pituitary, voltage-gated Ca2+ channels},
	pages = {870--881},
}

We recently reported that rodent anterior pituitary (AP) cells (with the exception of corticotrophs and melanotrophs) express neuronal markers, including 68-kDa neurofilaments (NF68) in an oestrogen-dependent manner. The functional significance of neurofilament (NF) expression in the AP is unknown, but recent data in myelinated nerve fibres from NF-null mice suggest that NFs can regulate ion channel function. Because Ca2+ influx through voltage-gated Ca2+ channels is required for hormone secretion in AP cells, and oestrogen regulates the expression of Ca2+ channels in AP cells, the present study examined the expression of α1 subunits of voltage gated Ca2+ channels in relation to that of NF68. Using quantitative immunofluorescence, we demonstrate that α1C and α1D subunits are abundantly expressed in female AP cells, α1A subunits are moderately expressed, and α1G and α1B subunits are expressed at the lowest levels. Double-immunostaining showed that NF68 expression is not correlated with that of α1C, α1D or α1B. Expression of α1G and NF68 appear to be mutually exclusive from each other. Moreover, α1A subunit and NF68 expression are significantly correlated and α1A immunoreactivity is sexually dimorphic (i.e. low in males and high in females) and its levels of expression vary during the oestrous cycle, similar to NF68. Finally, ω-agatoxin IVA, a specific blocker of P/Q type Ca2+ currents that are a result of the activity of α1A subunits, inhibited to a greater extent spontaneous [Ca2+]i fluctuations in AP cells from females in oestrous and dioestrous, whereas cells from females in pro-oestrous and males were less affected by this toxin. These results suggest a preferential participation of P/Q-type Ca2+ channels and hence α1A subunits, in regulating spontaneous Ca2+ transients in AP cells under conditions where the proportion of NF68-expressing cells is high. It remains to be determined whether the expression of NF68 affects that of α1A Ca2+ channel subunits or vice versa.

@article{hotta_web-based_2007,
	title = {A web-based interactive developmental table for the ascidian \textit{{Ciona} intestinalis} , including {3D} real-image embryo reconstructions: {I}. {From} fertilized egg to hatching larva},
	volume = {236},
	issn = {10588388, 10970177},
	shorttitle = {A web-based interactive developmental table for the ascidian \textit{{Ciona} intestinalis} , including {3D} real-image embryo reconstructions},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/dvdy.21188},
	doi = {10.1002/dvdy.21188},
	language = {en},
	number = {7},
	urldate = {2021-07-26},
	journal = {Developmental Dynamics},
	author = {Hotta, Kohji and Mitsuhara, Kenta and Takahashi, Hiroki and Inaba, Kazuo and Oka, Kotaro and Gojobori, Takashi and Ikeo, Kazuho},
	month = jul,
	year = {2007},
	pages = {1790--1805},
}

@article{inaba_molecular_2007,
	title = {Molecular {Basis} of {Sperm} {Flagellar} {Axonemes}: {Structural} and {Evolutionary} {Aspects}},
	volume = {1101},
	issn = {0077-8923},
	shorttitle = {Molecular {Basis} of {Sperm} {Flagellar} {Axonemes}},
	url = {http://doi.wiley.com/10.1196/annals.1389.017},
	doi = {10.1196/annals.1389.017},
	language = {en},
	number = {1},
	urldate = {2021-07-27},
	journal = {Annals of the New York Academy of Sciences},
	author = {Inaba, K.},
	month = feb,
	year = {2007},
	pages = {506--526},
}

@article{inaba_functional_2007,
	title = {Functional proteomics in \textit{{Ciona} intestinalis}: {A} breakthrough in the exploration of the molecular and cellular mechanism of ascidian development},
	volume = {236},
	issn = {10588388, 10970177},
	shorttitle = {Functional proteomics {inCiona} intestinalis},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/dvdy.21121},
	doi = {10.1002/dvdy.21121},
	language = {en},
	number = {7},
	urldate = {2021-07-27},
	journal = {Developmental Dynamics},
	author = {Inaba, Kazuo and Nomura, Mamoru and Nakajima, Ayako and Hozumi, Akiko},
	month = jul,
	year = {2007},
	pages = {1782--1789},
}

@article{itoh_fate_2007,
	title = {Fate of organic matter in faecal pellets egested by epifaunal mesograzers in a \textit{{Sargassum}} forest and implications for biogeochemical cycling},
	volume = {352},
	issn = {0171-8630, 1616-1599},
	url = {https://www.int-res.com/abstracts/meps/v352/p101-112/},
	doi = {10.3354/meps07163},
	abstract = {Fate of organic matter of the faecal pellets produced by epifaunal mesograzers in a Sargassum forest was elucidated by determination of the organic carbon and nitrogen flux and fatty acid composition of the 3 types of faecal pellets, i.e. fresh, sinking and precipitated. The organic carbon contents of those 3 types averaged 21.4, 6.0 and 5.5\% dry weight, respectively, showing a marked difference between the fresh and sinking types. The same trend was found for their organic nitrogen content. A dissolution-decomposition experiment ascertained the rapid loss of organic matter after the pellets were egested. The ratio of the unsaturated fatty acids to total fatty acids (UFA:TFA) decreased in the order of the fresh, sinking and precipitated pellets, whereas the bacterial biomarker fatty acids increased in that order. The daily sinking fluxes of the faecal pellets were 197 to 639 mgC and 15 to 53 mgN m–2 d–1 for organic carbon and nitrogen, respectively. This flux accounted for 7.4 to 13.4\% (C) and 9.4 to 20.3\% (N) of the primary production in the corresponding season of the Sargassum forest. The estimated residence time of the organic matter in the pellets together with the result of the dissolution-decomposition experiment indicated that about half of the organic carbon and nitrogen egested as faecal pellets was laterally exported to the pelagic zone by the exchange of water. Those possible lateral export fluxes accounted for 4.1 to 7.4\% (C) and 4.4 to 9.5\% (N) of Sargassum production.},
	language = {en},
	urldate = {2021-07-27},
	journal = {Marine Ecology Progress Series},
	author = {Itoh, Hiroshi and Aoki, Masakazu N. and Tsuchiya, Yasutaka and Sato, Toshihiko and Shinagawa, Hideo and Komatsu, Teruhisa and Mikami, Atsuko and Hama, Takeo},
	month = dec,
	year = {2007},
	keywords = {Biogeochemical cycle, Faecal pellet, Mesograzer, Sargassum forest, Sinking flux},
	pages = {101--112},
}

Fate of organic matter of the faecal pellets produced by epifaunal mesograzers in a Sargassum forest was elucidated by determination of the organic carbon and nitrogen flux and fatty acid composition of the 3 types of faecal pellets, i.e. fresh, sinking and precipitated. The organic carbon contents of those 3 types averaged 21.4, 6.0 and 5.5% dry weight, respectively, showing a marked difference between the fresh and sinking types. The same trend was found for their organic nitrogen content. A dissolution-decomposition experiment ascertained the rapid loss of organic matter after the pellets were egested. The ratio of the unsaturated fatty acids to total fatty acids (UFA:TFA) decreased in the order of the fresh, sinking and precipitated pellets, whereas the bacterial biomarker fatty acids increased in that order. The daily sinking fluxes of the faecal pellets were 197 to 639 mgC and 15 to 53 mgN m–2 d–1 for organic carbon and nitrogen, respectively. This flux accounted for 7.4 to 13.4% (C) and 9.4 to 20.3% (N) of the primary production in the corresponding season of the Sargassum forest. The estimated residence time of the organic matter in the pellets together with the result of the dissolution-decomposition experiment indicated that about half of the organic carbon and nitrogen egested as faecal pellets was laterally exported to the pelagic zone by the exchange of water. Those possible lateral export fluxes accounted for 4.1 to 7.4% (C) and 4.4 to 9.5% (N) of Sargassum production.

@article{joly_culture_2007,
	title = {Culture of \textit{{Ciona} intestinalis} in closed systems},
	volume = {236},
	issn = {10588388, 10970177},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/dvdy.21124},
	doi = {10.1002/dvdy.21124},
	language = {en},
	number = {7},
	urldate = {2021-07-27},
	journal = {Developmental Dynamics},
	author = {Joly, Jean-Stéphane and Kano, Shungo and Matsuoka, Terumi and Auger, Helene and Hirayama, Kazuko and Satoh, Nori and Awazu, Satoko and Legendre, Laurent and Sasakura, Yasunori},
	month = jul,
	year = {2007},
	pages = {1832--1840},
}

@article{katow_serotonin_2007,
	title = {Serotonin stimulates [{Ca2}+]i elevation in ciliary ectodermal cells of echinoplutei through a serotonin receptor cell network in the blastocoel},
	volume = {210},
	issn = {1477-9145, 0022-0949},
	url = {https://journals.biologists.com/jeb/article/210/3/403/2769/Serotonin-stimulates-Ca2-i-elevation-in-ciliary},
	doi = {10.1242/jeb.02666},
	abstract = {SUMMARY
            A full-length serotonin receptor mRNA from the 5Hthpr gene was sequenced from larvae of the sea urchin, Hemicentrotus pulcherrimus.The DNA sequence was most similar to 5HT-1A of the sea urchin Strongylocentrotus purpuratus found by The Sea Urchin Genome Project,and the protein sequence predicted the presence of seven transmembrane domains. Immunohistochemistry with anti-5HThpr antibodies indicated that the protein was expressed on blastocoelar cells that comprised the major blastocoelar network (serotonin receptor cell network). These network cells inserted their processes into the ectoderm in various regions, including the ciliary band region. Serotonin injected into the blastocoel stimulated a transient elevation of cytoplasmic Ca2+ concentration([Ca2+]i) in the ectoderm, as detected by Oregon-Green dextran, injected earlier in development. The calcium transient propagated as a wave at about 175 μm s–1, but was not detectable in the serotonin receptor-positive cell network. In larvae treated with p-chlorophenylalanine, a potent and irreversible serotonin synthesis inhibitor, serotonin application did not stimulate[Ca2+]i, the serotonin receptor cell network did not develop properly, and the swimming behavior of the larvae was abnormal. However, formation of a different nervous system comprising synaptotagmin-possessed neurites was not affected by p-chlorophenylalanine treatment. These results imply that serotonin secreted from the apical ganglion into the blastocoel stimulates the elevation of [Ca2+]i in the larval ectodermal cells through the serotonin receptor cell network.},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {Journal of Experimental Biology},
	author = {Katow, Hideki and Yaguchi, Shunsuke and Kyozuka, Keiichiro},
	month = feb,
	year = {2007},
	pages = {403--412},
}

SUMMARY A full-length serotonin receptor mRNA from the 5Hthpr gene was sequenced from larvae of the sea urchin, Hemicentrotus pulcherrimus.The DNA sequence was most similar to 5HT-1A of the sea urchin Strongylocentrotus purpuratus found by The Sea Urchin Genome Project,and the protein sequence predicted the presence of seven transmembrane domains. Immunohistochemistry with anti-5HThpr antibodies indicated that the protein was expressed on blastocoelar cells that comprised the major blastocoelar network (serotonin receptor cell network). These network cells inserted their processes into the ectoderm in various regions, including the ciliary band region. Serotonin injected into the blastocoel stimulated a transient elevation of cytoplasmic Ca2+ concentration([Ca2+]i) in the ectoderm, as detected by Oregon-Green dextran, injected earlier in development. The calcium transient propagated as a wave at about 175 μm s–1, but was not detectable in the serotonin receptor-positive cell network. In larvae treated with p-chlorophenylalanine, a potent and irreversible serotonin synthesis inhibitor, serotonin application did not stimulate[Ca2+]i, the serotonin receptor cell network did not develop properly, and the swimming behavior of the larvae was abnormal. However, formation of a different nervous system comprising synaptotagmin-possessed neurites was not affected by p-chlorophenylalanine treatment. These results imply that serotonin secreted from the apical ganglion into the blastocoel stimulates the elevation of [Ca2+]i in the larval ectodermal cells through the serotonin receptor cell network.

@article{komatsu_distribution_2007,
	series = {Selected papers from the {Second} {China}-{Japan}-{Korea} {GLOBEC} {Symposium} on the {Ecosystem} {Structure}, {Food} {Web} {Trophodynamics} and {Physical}-biological {Processes} in the {Northwest} {Pacific}},
	title = {Distribution of drifting seaweeds in eastern {East} {China} {Sea}},
	volume = {67},
	issn = {0924-7963},
	url = {https://www.sciencedirect.com/science/article/pii/S0924796306002284},
	doi = {10.1016/j.jmarsys.2006.05.018},
	abstract = {In offshore waters with relatively low primary production, drifting seaweeds composed of Sargassum species form an identical ecosystem such as an oasis in desert. Commercially important pelagic fishes such as jack mackerel (Trachurus japonicus) and yellow tail (Seriola quinqueradiata) spawn in East China Sea pass their juvenile period accompanying drifting seaweeds. Therefore drifting seaweeds are very important not only in offshore ecosystem but also fishery resources. However the distribution of drifting seaweeds in East China Sea has scarcely known. Then we conducted two research cruises of R/V Hakuho–Maru in May 2002 and in March 2004. During the cruises, drifting seaweeds were visually observed from the bridge and sampled with a towing net. The observation revealed that the drifting seaweeds were distributed along the front between the Kuroshio Current and coastal waters and mainly composed of one seaweed species, Sargassum horneri (Turner) C. Agardh from spring to early summer. There are no reports on geographical distribution of this species in the coasts south of southern Kyushu Island in Japan. Kuroshio Current flows northeastward there. Buoys with GPS attached to drifting seaweeds released off Zhejiang Province, China, in March 2005 to track their transport. Their positions monitored by ORBCOM satellite showed that they were transported to the area in East China Sea, where the drifting seaweeds were observed during the cruises, in 2 months. These facts suggest that S. horneri detached from Chinese coast in March or months earlier than March could be transported to fringe area of continental shelf and waters influenced by Kuroshio Current from March to May. Therefore the Sargassum forests, especially S. horneri, along the Chinese coast play a very important role in the ecosystem of the East China Sea as a source of drifting seaweeds.},
	language = {en},
	number = {3},
	urldate = {2021-07-27},
	journal = {Journal of Marine Systems},
	author = {Komatsu, Teruhisa and Tatsukawa, Kenichi and Filippi, Jean B. and Sagawa, Tatsuyuki and Matsunaga, Daisuke and Mikami, Atsuko and Ishida, Kenichi and Ajisaka, Tetsuro and Tanaka, Katsuhiko and Aoki, Masakazu and Wang, Wei-Ding and Liu, Hui-Fei and Zhang, Shou-Du and Zhou, Min-Dong and Sugimoto, Takashige},
	month = sep,
	year = {2007},
	keywords = {(Turner) C. Agardh, Drifting seaweeds, East China Sea, Kuroshio},
	pages = {245--252},
}

In offshore waters with relatively low primary production, drifting seaweeds composed of Sargassum species form an identical ecosystem such as an oasis in desert. Commercially important pelagic fishes such as jack mackerel (Trachurus japonicus) and yellow tail (Seriola quinqueradiata) spawn in East China Sea pass their juvenile period accompanying drifting seaweeds. Therefore drifting seaweeds are very important not only in offshore ecosystem but also fishery resources. However the distribution of drifting seaweeds in East China Sea has scarcely known. Then we conducted two research cruises of R/V Hakuho–Maru in May 2002 and in March 2004. During the cruises, drifting seaweeds were visually observed from the bridge and sampled with a towing net. The observation revealed that the drifting seaweeds were distributed along the front between the Kuroshio Current and coastal waters and mainly composed of one seaweed species, Sargassum horneri (Turner) C. Agardh from spring to early summer. There are no reports on geographical distribution of this species in the coasts south of southern Kyushu Island in Japan. Kuroshio Current flows northeastward there. Buoys with GPS attached to drifting seaweeds released off Zhejiang Province, China, in March 2005 to track their transport. Their positions monitored by ORBCOM satellite showed that they were transported to the area in East China Sea, where the drifting seaweeds were observed during the cruises, in 2 months. These facts suggest that S. horneri detached from Chinese coast in March or months earlier than March could be transported to fringe area of continental shelf and waters influenced by Kuroshio Current from March to May. Therefore the Sargassum forests, especially S. horneri, along the Chinese coast play a very important role in the ecosystem of the East China Sea as a source of drifting seaweeds.

@article{miyamoto_morphology_2007,
	title = {Morphology and {Development} of a {New} {Species} of \textit{{Balanoglossus}} ({Hemichordata}: {Enteropneusta}: {Ptychoderidae}) from {Shimoda}, {Japan}},
	volume = {24},
	issn = {0289-0003},
	shorttitle = {Morphology and {Development} of a {New} {Species} of {Balanoglossus} ({Hemichordata}},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.24.1278},
	doi = {10.2108/zsj.24.1278},
	language = {en},
	number = {12},
	urldate = {2021-07-27},
	journal = {Zoological Science},
	author = {Miyamoto, Norio and Saito, Yasunori},
	month = dec,
	year = {2007},
	pages = {1278--1285},
}

@article{poustka_global_2007,
	title = {A global view of gene expression in lithium and zinc treated sea urchin embryos: new components of gene regulatory networks},
	volume = {8},
	issn = {14656906},
	shorttitle = {A global view of gene expression in lithium and zinc treated sea urchin embryos},
	url = {http://genomebiology.biomedcentral.com/articles/10.1186/gb-2007-8-5-r85},
	doi = {10.1186/gb-2007-8-5-r85},
	number = {5},
	urldate = {2021-07-27},
	journal = {Genome Biology},
	author = {Poustka, Albert J and Kühn, Alexander and Groth, Detlef and Weise, Vesna and Yaguchi, Shunsuke and Burke, Robert D and Herwig, Ralf and Lehrach, Hans and Panopoulou, Georgia},
	year = {2007},
	pages = {R85},
}

@article{prodon_postplasmicpem_2007,
	title = {Postplasmic/{PEM} {RNAs}: {A} class of localized maternal {mRNAs} with multiple roles in cell polarity and development in ascidian embryos},
	volume = {236},
	issn = {10588388, 10970177},
	shorttitle = {Postplasmic/{PEM} {RNAs}},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/dvdy.21109},
	doi = {10.1002/dvdy.21109},
	language = {en},
	number = {7},
	urldate = {2021-07-27},
	journal = {Developmental Dynamics},
	author = {Prodon, François and Yamada, Lixy and Shirae-Kurabayashi, Maki and Nakamura, Yoriko and Sasakura, Yasunori},
	month = jul,
	year = {2007},
	pages = {1698--1715},
}

@article{sasakura_germline_2007,
	title = {Germline transgenesis and insertional mutagenesis in the ascidian \textit{{Ciona} intestinalis}},
	volume = {236},
	issn = {10588388, 10970177},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/dvdy.21111},
	doi = {10.1002/dvdy.21111},
	language = {en},
	number = {7},
	urldate = {2021-07-27},
	journal = {Developmental Dynamics},
	author = {Sasakura, Yasunori},
	month = jul,
	year = {2007},
	pages = {1758--1767},
}

@article{sasakura_transposon_2007,
	title = {Transposon mediated transgenesis in a marine invertebrate chordate: \textit{{Ciona} intestinalis}},
	volume = {8},
	issn = {14656906},
	shorttitle = {Transposon mediated transgenesis in a marine invertebrate chordate},
	url = {http://genomebiology.biomedcentral.com/articles/10.1186/gb-2007-8-s1-s3},
	doi = {10.1186/gb-2007-8-s1-s3},
	number = {Suppl 1},
	urldate = {2021-07-27},
	journal = {Genome Biology},
	author = {Sasakura, Yasunori and Oogai, Yuichi and Matsuoka, Terumi and Satoh, Nori and Awazu, Satoko},
	year = {2007},
	pages = {S3},
}

@article{wada_quantitative_2007,
	title = {Quantitative and qualitative analyses of dissolved organic matter released from \textit{{Ecklonia} cava} {Kjellman}, in {Oura} {Bay}, {Shimoda}, {Izu} {Peninsula}, {Japan}},
	volume = {349},
	issn = {0022-0981},
	url = {https://www.sciencedirect.com/science/article/pii/S0022098107002699},
	doi = {10.1016/j.jembe.2007.05.024},
	abstract = {Release of dissolved organic matter (DOM) was studied on macroalga, Ecklonia cava Kjellman, by in situ field bag experiments, which were designed to keep the algal body under natural field condition, in Oura Bay, Shimoda, Izu Peninsula, Japan, from August 2003 to May 2005. The experiments were conducted 6 times in different seasons. The concentrations of dissolved organic carbon (DOC) in the experimental bag generally increased during the first 1–2 days, showing the release of DOC from algae. The daily release rates of DOC varied between 0.12 and 5.8 mgC per g (dry wt) of the algal blades per day. The seasonal variability of the DOC release rate was similar to those of the growth and the photosynthetic rates reported by the previous studies on E. cava in the same location. The fractions of the DOC release of the net primary production accounted for 18–62\%. These contributions are comparable to other macroalgae in the previous studies (27–43\%) using other macroalgae. Analysis of organic composition of DOM using gas chromatography (neutral aldose composition) and spectrometry (UV-visible and fluorescence) indicates that E. cava usually release extracellular products containing mucilaginous polysaccharides containing fucose as a main constituent and colored dissolved organic matter (CDOM). The release of these organic compounds is likely performed as the ordinary metabolism of brown algae. An exceptional release of a considerable amount of protein and carbohydrates mainly composed of mannose was found in June 2004, probably reflecting leakage of the intracellular material by an autolysis of the algal cells. The high DOM release rate in the present study suggests that macroalgae would be one of the important DOM producers in coastal regions.},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Journal of Experimental Marine Biology and Ecology},
	author = {Wada, Shigeki and Aoki, Masakazu N. and Tsuchiya, Yasutaka and Sato, Toshihiko and Shinagawa, Hideo and Hama, Takeo},
	month = oct,
	year = {2007},
	keywords = {DOM release, Fluorescence, Macroalgae, Neutral carbohydrate, Seasonal variation},
	pages = {344--358},
}

Release of dissolved organic matter (DOM) was studied on macroalga, Ecklonia cava Kjellman, by in situ field bag experiments, which were designed to keep the algal body under natural field condition, in Oura Bay, Shimoda, Izu Peninsula, Japan, from August 2003 to May 2005. The experiments were conducted 6 times in different seasons. The concentrations of dissolved organic carbon (DOC) in the experimental bag generally increased during the first 1–2 days, showing the release of DOC from algae. The daily release rates of DOC varied between 0.12 and 5.8 mgC per g (dry wt) of the algal blades per day. The seasonal variability of the DOC release rate was similar to those of the growth and the photosynthetic rates reported by the previous studies on E. cava in the same location. The fractions of the DOC release of the net primary production accounted for 18–62%. These contributions are comparable to other macroalgae in the previous studies (27–43%) using other macroalgae. Analysis of organic composition of DOM using gas chromatography (neutral aldose composition) and spectrometry (UV-visible and fluorescence) indicates that E. cava usually release extracellular products containing mucilaginous polysaccharides containing fucose as a main constituent and colored dissolved organic matter (CDOM). The release of these organic compounds is likely performed as the ordinary metabolism of brown algae. An exceptional release of a considerable amount of protein and carbohydrates mainly composed of mannose was found in June 2004, probably reflecting leakage of the intracellular material by an autolysis of the algal cells. The high DOM release rate in the present study suggests that macroalgae would be one of the important DOM producers in coastal regions.

@article{yaguchi_sp-smad23_2007,
	title = {Sp-{Smad2}/3 mediates patterning of neurogenic ectoderm by nodal in the sea urchin embryo},
	volume = {302},
	issn = {00121606},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0012160606013005},
	doi = {10.1016/j.ydbio.2006.10.010},
	language = {en},
	number = {2},
	urldate = {2021-07-27},
	journal = {Developmental Biology},
	author = {Yaguchi, Shunsuke and Yaguchi, Junko and Burke, Robert D.},
	month = feb,
	year = {2007},
	pages = {494--503},
}

@article{_halobates_2007,
	title = {海洋性昆虫ウミアメンボ\textit{{Halobates} japonicus} {Esaki} ({Hemiptera}: {Gerridae}) の群れの野外における動画解析試験},
	volume = {24},
	journal = {盛岡大学紀要},
	author = {{井川輝美} and {岡部秀彦} and {青木優和} and {渡辺守}},
	year = {2007},
	pages = {49--57},
}

@article{__2007,
	title = {カタユウレイボヤにおける固着生活とセルロースの関係},
	volume = {24},
	number = {2},
	journal = {Sessile Organisms},
	author = {{笹倉靖徳}},
	year = {2007},
	pages = {127--131},
}

@article{bellgrove_small-scale_2006,
	title = {Small-scale temporal variation in propagule supply of an intertidal red alga},
	volume = {45},
	issn = {0031-8884, 2330-2968},
	url = {https://www.tandfonline.com/doi/full/10.2216/05-53.1},
	doi = {10.2216/05-53.1},
	language = {en},
	number = {4},
	urldate = {2021-07-26},
	journal = {Phycologia},
	author = {Bellgrove, Alecia and Aoki, Masakazu N.},
	month = jul,
	year = {2006},
	pages = {458--464},
}

@article{burke_neuron-specific_2006,
	title = {Neuron-specific expression of a synaptotagmin gene in the sea urchin \textit{{Strongylocentrotus} purpuratus}},
	volume = {496},
	issn = {0021-9967, 1096-9861},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/cne.20939},
	doi = {10.1002/cne.20939},
	language = {en},
	number = {2},
	urldate = {2021-07-26},
	journal = {The Journal of Comparative Neurology},
	author = {Burke, Robert D. and Osborne, Lisa and Wang, Diana and Murabe, Naoyuki and Yaguchi, Shunsuke and Nakajima, Yoko},
	month = may,
	year = {2006},
	pages = {244--251},
}

@article{burke_genomic_2006,
	title = {A genomic view of the sea urchin nervous system},
	volume = {300},
	issn = {00121606},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0012160606010773},
	doi = {10.1016/j.ydbio.2006.08.007},
	language = {en},
	number = {1},
	urldate = {2021-07-26},
	journal = {Developmental Biology},
	author = {Burke, R.D. and Angerer, L.M. and Elphick, M.R. and Humphrey, G.W. and Yaguchi, S. and Kiyama, T. and Liang, S. and Mu, X. and Agca, C. and Klein, W.H. and Brandhorst, B.P. and Rowe, M. and Wilson, K. and Churcher, A.M. and Taylor, J.S. and Chen, N. and Murray, G. and Wang, D. and Mellott, D. and Olinski, R. and Hallböök, F. and Thorndyke, M.C.},
	month = dec,
	year = {2006},
	pages = {434--460},
}

@article{hozumi_molecular_2006,
	title = {Molecular characterization of \textit{{Ciona}} sperm outer arm dynein reveals multiple components related to outer arm docking complex protein 2},
	volume = {63},
	issn = {0886-1544, 1097-0169},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/cm.20146},
	doi = {10.1002/cm.20146},
	language = {en},
	number = {10},
	urldate = {2021-07-26},
	journal = {Cell Motility and the Cytoskeleton},
	author = {Hozumi, Akiko and Satouh, Yuhkoh and Makino, Yumiko and Toda, Toshifusa and Ide, Hiroyuki and Ogawa, Kazuo and King, Stephen M. and Inaba, Kazuo},
	month = oct,
	year = {2006},
	pages = {591--603},
}

@article{mikami_seasonal_2006,
	title = {Seasonal changes in growth and photosynthesis-light curves of \textit{{Sargassum} horneri} ({Fucales}, {Phaeophyta}) in {Oura} {Bay} on the {Pacific} coast of central {Honshu}, {Japan}},
	volume = {44},
	issn = {05031540},
	url = {https://ci.nii.ac.jp/naid/10021917384/},
	number = {3},
	urldate = {2021-07-26},
	journal = {La mer.},
	author = {Mikami, Atsuko and Komatsu, Teruhisa and Aoki, Masakazu and Yokohama, Yasutsugu},
	month = nov,
	year = {2006},
	note = {Publisher: 日仏海洋学会},
	keywords = {Sargassum horneri (Turner) C. Agardh, growth, photosynthesis-light curve, seasonal change},
	pages = {109--118},
}

@article{nishigaki_stroboscopic_2006,
	title = {Stroboscopic illumination using light-emitting diodes reduces phototoxicity in fluorescence cell imaging},
	volume = {41},
	number = {2},
	journal = {Biotechniques},
	author = {Nishigaki, Takuya and Wood, Christopher D. and Shiba, Kogiku and Baba, Shoji A. and Darszon, Alberto},
	year = {2006},
	pages = {191--197},
}

@article{ogawa_ap58_2006,
	title = {Ap58: {A} novel in situ outer dynein arm-binding protein},
	volume = {343},
	issn = {0006291X},
	shorttitle = {Ap58},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0006291X06004724},
	doi = {10.1016/j.bbrc.2006.02.157},
	language = {en},
	number = {2},
	urldate = {2021-07-26},
	journal = {Biochemical and Biophysical Research Communications},
	author = {Ogawa, Kazuo and Inaba, Kazuo},
	month = may,
	year = {2006},
	pages = {385--390},
}

@article{sea_urchin_genome_sequencing_consortium_genome_2006,
	title = {The {Genome} of the {Sea} {Urchin} \textit{{Strongylocentrotus} purpuratus}},
	volume = {314},
	issn = {0036-8075, 1095-9203},
	url = {https://www.sciencemag.org/lookup/doi/10.1126/science.1133609},
	doi = {10.1126/science.1133609},
	language = {en},
	number = {5801},
	urldate = {2021-07-26},
	journal = {Science},
	author = {{Sea Urchin Genome Sequencing Consortium} and Sodergren, E. and Weinstock, G. M. and Davidson, E. H and Cameron, R. A. and Gibbs, R. A. and Angerer, R. C. and Angerer, L. M. and Arnone, M. I. and Burgess, D. R. and Burke, R. D. and Coffman, J. A. and Dean, M. and Elphick, M. R. and Ettensohn, C. A. and Foltz, K. R. and Hamdoun, A. and Hynes, R. O. and Klein, W. H. and Marzluff, W. and McClay, D. R. and Morris, R. L. and Mushegian, A. and Rast, J. P. and Smith, L. C. and Thorndyke, M. C. and Vacquier, V. D. and Wessel, G. M. and Wray, G. and Zhang, L. and Elsik, C. G. and Ermolaeva, O. and Hlavina, W. and Hofmann, G. and Kitts, P. and Landrum, M. J. and Mackey, A. J. and Maglott, D. and Panopoulou, G. and Poustka, A. J. and Pruitt, K. and Sapojnikov, V. and Song, X. and Souvorov, A. and Solovyev, V. and Wei, Z. and Whittaker, C. A. and Worley, K. and Durbin, K. J. and Shen, Y. and Fedrigo, O. and Garfield, D. and Haygood, R. and Primus, A. and Satija, R. and Severson, T. and Gonzalez-Garay, M. L. and Jackson, A. R. and Milosavljevic, A. and Tong, M. and Killian, C. E. and Livingston, B. T. and Wilt, F. H. and Adams, N. and Belle, R. and Carbonneau, S. and Cheung, R. and Cormier, P. and Cosson, B. and Croce, J. and Fernandez-Guerra, A. and Geneviere, A.-M. and Goel, M. and Kelkar, H. and Morales, J. and Mulner-Lorillon, O. and Robertson, A. J. and Goldstone, J. V. and Cole, B. and Epel, D. and Gold, B. and Hahn, M. E. and Howard-Ashby, M. and Scally, M. and Stegeman, J. J. and Allgood, E. L. and Cool, J. and Judkins, K. M. and McCafferty, S. S. and Musante, A. M. and Obar, R. A. and Rawson, A. P. and Rossetti, B. J. and Gibbons, I. R. and Hoffman, M. P. and Leone, A. and Istrail, S. and Materna, S. C. and Samanta, M. P. and Stolc, V. and Tongprasit, W. and Tu, Q. and Bergeron, K.-F. and Brandhorst, B. P. and Whittle, J. and Berney, K. and Bottjer, D. J. and Calestani, C. and Peterson, K. and Chow, E. and Yuan, Q. A. and Elhaik, E. and Graur, D. and Reese, J. T. and Bosdet, I. and Heesun, S. and Marra, M. A. and Schein, J. and Anderson, M. K. and Brockton, V. and Buckley, K. M. and Cohen, A. H. and Fugmann, S. D. and Hibino, T. and Loza-Coll, M. and Majeske, A. J. and Messier, C. and Nair, S. V. and Pancer, Z. and Terwilliger, D. P. and Agca, C. and Arboleda, E. and Chen, N. and Churcher, A. M. and Hallbook, F. and Humphrey, G. W. and Idris, M. M. and Kiyama, T. and Liang, S. and Mellott, D. and Mu, X. and Murray, G. and Olinski, R. P. and Raible, F. and Rowe, M. and Taylor, J. S. and Tessmar-Raible, K. and Wang, D. and Wilson, K. H. and Yaguchi, S. and Gaasterland, T. and Galindo, B. E. and Gunaratne, H. J. and Juliano, C. and Kinukawa, M. and Moy, G. W. and Neill, A. T. and Nomura, M. and Raisch, M. and Reade, A. and Roux, M. M. and Song, J. L. and Su, Y.-H. and Townley, I. K. and Voronina, E. and Wong, J. L. and Amore, G. and Branno, M. and Brown, E. R. and Cavalieri, V. and Duboc, V. and Duloquin, L. and Flytzanis, C. and Gache, C. and Lapraz, F. and Lepage, T. and Locascio, A. and Martinez, P. and Matassi, G. and Matranga, V. and Range, R. and Rizzo, F. and Rottinger, E. and Beane, W. and Bradham, C. and Byrum, C. and Glenn, T. and Hussain, S. and Manning, F. G. and Miranda, E. and Thomason, R. and Walton, K. and Wikramanayke, A. and Wu, S.-Y. and Xu, R. and Brown, C. T. and Chen, L. and Gray, R. F. and Lee, P. Y. and Nam, J. and Oliveri, P. and Smith, J. and Muzny, D. and Bell, S. and Chacko, J. and Cree, A. and Curry, S. and Davis, C. and Dinh, H. and Dugan-Rocha, S. and Fowler, J. and Gill, R. and Hamilton, C. and Hernandez, J. and Hines, S. and Hume, J. and Jackson, L. and Jolivet, A. and Kovar, C. and Lee, S. and Lewis, L. and Miner, G. and Morgan, M. and Nazareth, L. V. and Okwuonu, G. and Parker, D. and Pu, L.-L. and Thorn, R. and Wright, R.},
	month = nov,
	year = {2006},
	pages = {941--952},
}

@article{shiba_naca2_2006,
	title = {Na+/{Ca2}+ exchanger modulates the flagellar wave pattern for the regulation of motility activation and chemotaxis in the ascidian spermatozoa},
	volume = {63},
	issn = {0886-1544, 1097-0169},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/cm.20149},
	doi = {10.1002/cm.20149},
	language = {en},
	number = {10},
	urldate = {2021-07-26},
	journal = {Cell Motility and the Cytoskeleton},
	author = {Shiba, Kogiku and Márián, Teréz and Krasznai, Zoltan and Baba, Shoji A. and Morisawa, Masaaki and Yoshida, Manabu},
	month = oct,
	year = {2006},
	pages = {623--632},
}

@article{shiba_peptide-induced_2006,
	title = {Peptide-induced hyperactivation-like vigorous flagellar movement in starfish sperm},
	volume = {14},
	issn = {0967-1994, 1469-8730},
	url = {https://www.cambridge.org/core/product/identifier/S0967199405003503/type/journal_article},
	doi = {10.1017/S0967199405003503},
	abstract = {Asterosap, a sperm-activating peptide (SAP) from the starfish egg jelly coat, is diffusible and controls a cGMP-signalling pathway in starfish sperm in the same manner as resact, a potent chemoattracting SAP in sea urchins. This fact suggests that asterosap may serve as a chemoattractant like resact at concentrations with appropriate gradients. Since asterosap is one of three egg jelly components, which in concert induce the acrosome reaction, it is still worthwhile to evaluate how asterosap modulates sperm motility prior to this reaction. We analysed the flagellar movement of sperm of the starfish
              Aphelasterias japonica
              in artificial seawater (ASW) containing the asterosap isoform P15 at 1 μmol l
              −1
              . We found that sperm swim straighter with more symmetrical flagellar movement in P15 than in ASW, but without any significant difference in the flagellar beat frequency and the swimming velocity. The flagellar movement is, however, dramatically different between sperm firmly attached to the solid surface by the head in P15 and those attached in ASW: in P15 the flagellum bends to a greater extent, with higher curvature and with higher shear angle up to a right angle to the flagellar wave axis, and beats at an increased frequency. The vigorous flagellar movement of sperm, which can be activated when sperm are placed in high-load circumstances just as entering into a jelly layer, may increase propulsive forces and hydrodynamic resistances, allowing sperm to undergo the acrosome reaction as effectively as possible.},
	language = {en},
	number = {1},
	urldate = {2021-07-26},
	journal = {Zygote},
	author = {Shiba, Kogiku and Tagata, Tomoko and Ohmuro, Junko and Mogami, Yoshihiro and Matsumoto, Midori and Hoshi, Motonori and Baba, Shoji A.},
	month = feb,
	year = {2006},
	pages = {23--32},
}

Asterosap, a sperm-activating peptide (SAP) from the starfish egg jelly coat, is diffusible and controls a cGMP-signalling pathway in starfish sperm in the same manner as resact, a potent chemoattracting SAP in sea urchins. This fact suggests that asterosap may serve as a chemoattractant like resact at concentrations with appropriate gradients. Since asterosap is one of three egg jelly components, which in concert induce the acrosome reaction, it is still worthwhile to evaluate how asterosap modulates sperm motility prior to this reaction. We analysed the flagellar movement of sperm of the starfish Aphelasterias japonica in artificial seawater (ASW) containing the asterosap isoform P15 at 1 μmol l −1 . We found that sperm swim straighter with more symmetrical flagellar movement in P15 than in ASW, but without any significant difference in the flagellar beat frequency and the swimming velocity. The flagellar movement is, however, dramatically different between sperm firmly attached to the solid surface by the head in P15 and those attached in ASW: in P15 the flagellum bends to a greater extent, with higher curvature and with higher shear angle up to a right angle to the flagellar wave axis, and beats at an increased frequency. The vigorous flagellar movement of sperm, which can be activated when sperm are placed in high-load circumstances just as entering into a jelly layer, may increase propulsive forces and hydrodynamic resistances, allowing sperm to undergo the acrosome reaction as effectively as possible.

@article{sunanaga_postembryonic_2006,
	title = {Postembryonic epigenesis of {Vasa}-positive germ cells from aggregated hemoblasts in the colonial ascidian, \textit{{Botryllus} primigenus}},
	volume = {48},
	issn = {0012-1592, 1440-169X},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1440-169X.2006.00849.x},
	doi = {10.1111/j.1440-169X.2006.00849.x},
	language = {en},
	number = {2},
	urldate = {2021-07-26},
	journal = {Development, Growth and Differentiation},
	author = {Sunanaga, Takeshi and Saito, Yasunori and Kawamura, Kazuo},
	month = feb,
	year = {2006},
	pages = {87--100},
}

@article{tanabe_novel_2006,
	title = {A novel oocyte maturation arresting factor in the central nervous system of scallops inhibits serotonin-induced oocyte maturation and spawning of bivalve mollusks},
	volume = {147},
	issn = {00166480},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0016648006000426},
	doi = {10.1016/j.ygcen.2006.02.004},
	language = {en},
	number = {3},
	urldate = {2021-07-26},
	journal = {General and Comparative Endocrinology},
	author = {Tanabe, Toru and Osada, Makoto and Kyozuka, Keiichiro and Inaba, Kazuo and Kijima, Akihiro},
	month = jul,
	year = {2006},
	pages = {352--361},
}

@article{ushimaru_association_2006,
	title = {Association of a 66 {kDa} {Homolog} of {Chlamydomonas} {DC2}, a {Subunit} of the {Outer} {Arm} {Docking} {Complex}, with {Outer} {Arm} {Dynein} of {Sperm} {Flagella} in the {Ascidian} \textit{{Ciona} intestinalis}},
	volume = {23},
	issn = {0289-0003},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.23.679},
	doi = {10.2108/zsj.23.679},
	language = {en},
	number = {8},
	urldate = {2021-07-26},
	journal = {Zoological Science},
	author = {Ushimaru, Yuji and Konno, Aru and Kaizu, Maiko and Ogawa, Kazuo and Satoh, Nori and Inaba, Kazuo},
	month = aug,
	year = {2006},
	pages = {679--687},
}

@article{yaguchi_embryonic_2006,
	title = {Embryonic expression of engrailed in sea urchins},
	volume = {6},
	issn = {1567133X},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S1567133X05001262},
	doi = {10.1016/j.modgep.2005.10.004},
	language = {en},
	number = {5},
	urldate = {2021-07-26},
	journal = {Gene Expression Patterns},
	author = {Yaguchi, Shunsuke and Nakajima, Yoko and Wang, Diana and Burke, Robert D.},
	month = jun,
	year = {2006},
	pages = {566--571},
}

@article{yaguchi_specification_2006,
	title = {Specification of ectoderm restricts the size of the animal plate and patterns neurogenesis in sea urchin embryos},
	volume = {133},
	issn = {1477-9129, 0950-1991},
	url = {https://journals.biologists.com/dev/article/133/12/2337/43093/Specification-of-ectoderm-restricts-the-size-of},
	doi = {10.1242/dev.02396},
	abstract = {The animal plate of the sea urchin embryo becomes the apical organ, a sensory structure of the larva. In the absence of vegetal signaling, an expanded and unpatterned apical organ forms. To investigate the signaling that restricts the size of the animal plate and patterns neurogenesis, we have expressed molecules that regulate specification of ectoderm in embryos and chimeras. Enhancing oral ectoderm suppresses serotonergic neuron differentiation, whereas enhancing aboral or ciliary band ectoderm increases differentiation of serotonergic neurons. In embryos in which vegetal signaling is blocked, Nodal expression does not reduce the size of the thickened animal plate; however, almost no neurons form. Expression of BMP in the absence of vegetal signaling also does not restrict the size of the animal plate, but abundant serotonergic neurons form. In chimeras in which vegetal signaling is blocked in the entire embryo, and one half of the embryo expresses Nodal,serotonergic neuron formation is suppressed in both halves. In similar chimeras in which vegetal signaling is blocked and one half of the embryo expresses Goosecoid (Gsc), serotonergic neurons form only in the half of the embryo not expressing Gsc. We propose that neurogenesis is specified by a maternal program that is restricted to the animal pole by signaling that is dependent on nuclearization of β-catenin and specifies ciliary band ectoderm. Subsequently, neurogenesis in the animal plate is patterned by suppression of serotonergic neuron formation by Nodal. Like other metazoans,echinoderms appear to have a phase of neural development during which the specification of ectoderm restricts and patterns neurogenesis.},
	language = {en},
	number = {12},
	urldate = {2021-07-26},
	journal = {Development},
	author = {Yaguchi, Shunsuke and Yaguchi, Junko and Burke, Robert D.},
	month = jun,
	year = {2006},
	pages = {2337--2346},
}

The animal plate of the sea urchin embryo becomes the apical organ, a sensory structure of the larva. In the absence of vegetal signaling, an expanded and unpatterned apical organ forms. To investigate the signaling that restricts the size of the animal plate and patterns neurogenesis, we have expressed molecules that regulate specification of ectoderm in embryos and chimeras. Enhancing oral ectoderm suppresses serotonergic neuron differentiation, whereas enhancing aboral or ciliary band ectoderm increases differentiation of serotonergic neurons. In embryos in which vegetal signaling is blocked, Nodal expression does not reduce the size of the thickened animal plate; however, almost no neurons form. Expression of BMP in the absence of vegetal signaling also does not restrict the size of the animal plate, but abundant serotonergic neurons form. In chimeras in which vegetal signaling is blocked in the entire embryo, and one half of the embryo expresses Nodal,serotonergic neuron formation is suppressed in both halves. In similar chimeras in which vegetal signaling is blocked and one half of the embryo expresses Goosecoid (Gsc), serotonergic neurons form only in the half of the embryo not expressing Gsc. We propose that neurogenesis is specified by a maternal program that is restricted to the animal pole by signaling that is dependent on nuclearization of β-catenin and specifies ciliary band ectoderm. Subsequently, neurogenesis in the animal plate is patterned by suppression of serotonergic neuron formation by Nodal. Like other metazoans,echinoderms appear to have a phase of neural development during which the specification of ectoderm restricts and patterns neurogenesis.

@article{__2006-5,
	title = {東シナ海における流れ藻の分布 (総特集 流れ藻研究(2)動物との関り・東シナ海の流れ藻)},
	volume = {38},
	issn = {09162011},
	url = {https://ci.nii.ac.jp/naid/40015194700},
	number = {11},
	urldate = {2021-07-26},
	journal = {月刊海洋},
	author = {{小松輝久} and {三上温子} and {松永大輔} and {佐川龍之} and {石田} and {立川賢一} and {鰺坂哲朗} and {田中克彦} and {青木優和} and {杉本隆成}},
	month = nov,
	year = {2006},
	note = {Publisher: 海洋出版},
	pages = {807--810},
}

@article{__2006-6,
	title = {中国沿岸のアカモクの分布–特に浙江省を中心にして (総特集 流れ藻研究(2)動物との関り・東シナ海の流れ藻)},
	volume = {38},
	issn = {09162011},
	url = {https://ci.nii.ac.jp/naid/40015194698},
	number = {11},
	urldate = {2021-07-26},
	journal = {月刊海洋},
	author = {{小松輝久} and {王偉定} and {立川賢一} and {章守宇} and {鰺坂} and {上井進也} and {田中克彦} and {青木優和} and {杉本}},
	month = nov,
	year = {2006},
	note = {Publisher: 海洋出版},
	pages = {795--797},
}

@misc{__2006,
	title = {「精子鞭毛運動とプロテアソーム},
	publisher = {新編精子学　東京大学出版会},
	author = {{稲葉一男}},
	year = {2006},
}

@misc{__2006-1,
	title = {ゲノム情報と精子学},
	publisher = {新編精子学　東京大学出版会},
	author = {{稲葉一男}},
	year = {2006},
}

@article{__2006-2,
	title = {臨海実験施設の将来像},
	volume = {23},
	journal = {比較生理生化学},
	author = {{稲葉一男}},
	year = {2006},
	pages = {193},
}

@article{__2006-3,
	title = {カタユウレイボヤのバイオリソース化に向けて},
	volume = {25},
	journal = {細胞工学},
	author = {{笹倉靖徳} and {稲葉一男} and {佐藤}},
	year = {2006},
	pages = {1460--1461},
}

@article{__2006-4,
	title = {伊豆半島下田沿岸のワレカラ類},
	volume = {41},
	journal = {国立科学博物館専報},
	author = {{青木優和} and {武田}},
	year = {2006},
	pages = {65--70},
}

@article{__2006-7,
	title = {ワレカラにとっての流れ藻という生息場所 (総特集 流れ藻研究(2)動物との関り・東シナ海の流れ藻)},
	volume = {38},
	issn = {09162011},
	url = {https://ci.nii.ac.jp/naid/40015194702},
	number = {11},
	urldate = {2021-07-26},
	journal = {月刊海洋},
	author = {青木優和 and 田中克彦 and 小松輝久},
	month = nov,
	year = {2006},
	note = {Publisher: 海洋出版},
	pages = {816--822},
}

@article{hirose_still_2005,
	title = {Still alive? {Fine} structure of the barrels made by \textit{{Phronima}} ({Crustacea}: {Amphipoda})},
	volume = {85},
	issn = {0025-3154, 1469-7769},
	shorttitle = {Still alive?},
	url = {https://www.cambridge.org/core/product/identifier/S0025315405012610/type/journal_article},
	doi = {10.1017/S0025315405012610},
	abstract = {Amphipods of the genus
              Phronima
              are known to make a barrel-shaped house from the gelatinous matrix of pelagic tunicates or siphonophores. Among the seven barrels examined here, one barrel of
              Phronima curvipes
              was supposed to be made from a swimming bell of a siphonophore based on its morphology, while the other six barrels made by
              P. sedentaria
              were immunochemically and/or morphologically identified as tunicates (i.e.
              Thetys vagina
              , other salps and pyrosomas). Histological observation showed that the phronimids had completely eaten the animal tissues other than the gelatinous matrix (i.e. tunic or mesoglea). Tunic cells were found in the tunicate barrel and some were probably tunic phagocytes that appeared to be alive and functional. In the tunicate barrels, cuticular layers of the tunic were found on both the outer and inner side of the barrel wall. Tunic cuticle would be regenerated on the inner side after the epidermis was grazed by the phronimids. The cuticular layers would protect the tunic matrix from the invasion of microorganisms. In the barrel supposed to originate from
              Thetys vagina
              , there are minute protrusions on the tunic cuticle as found in the intact tunic of this species. In the barrel from a siphonophore, neither cells nor cuticle regeneration were found. No bacteria were observed in the barrel, suggesting that the barrel has some antibiotic system.},
	language = {en},
	number = {6},
	urldate = {2021-07-26},
	journal = {Journal of the Marine Biological Association of the United Kingdom},
	author = {Hirose, Euichi and Aoki, Masakazu N. and Nishikawa, Jun},
	month = dec,
	year = {2005},
	pages = {1435--1439},
}

Amphipods of the genus Phronima are known to make a barrel-shaped house from the gelatinous matrix of pelagic tunicates or siphonophores. Among the seven barrels examined here, one barrel of Phronima curvipes was supposed to be made from a swimming bell of a siphonophore based on its morphology, while the other six barrels made by P. sedentaria were immunochemically and/or morphologically identified as tunicates (i.e. Thetys vagina , other salps and pyrosomas). Histological observation showed that the phronimids had completely eaten the animal tissues other than the gelatinous matrix (i.e. tunic or mesoglea). Tunic cells were found in the tunicate barrel and some were probably tunic phagocytes that appeared to be alive and functional. In the tunicate barrels, cuticular layers of the tunic were found on both the outer and inner side of the barrel wall. Tunic cuticle would be regenerated on the inner side after the epidermis was grazed by the phronimids. The cuticular layers would protect the tunic matrix from the invasion of microorganisms. In the barrel supposed to originate from Thetys vagina , there are minute protrusions on the tunic cuticle as found in the intact tunic of this species. In the barrel from a siphonophore, neither cells nor cuticle regeneration were found. No bacteria were observed in the barrel, suggesting that the barrel has some antibiotic system.

@article{matsuoka_germline_2005,
	title = {Germline transgenesis of the ascidian \textit{{Ciona} intestinalis} by electroporation},
	volume = {41},
	issn = {1526-954X, 1526-968X},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/gene.20096},
	doi = {10.1002/gene.20096},
	language = {en},
	number = {2},
	urldate = {2021-07-26},
	journal = {genesis},
	author = {Matsuoka, Terumi and Awazu, Satoko and Shoguchi, Eiichi and Satoh, Nori and Sasakura, Yasunori},
	month = feb,
	year = {2005},
	pages = {67--72},
}

@article{murata_phosphoinositide_2005,
	title = {Phosphoinositide phosphatase activity coupled to an intrinsic voltage sensor},
	volume = {435},
	issn = {0028-0836, 1476-4687},
	url = {http://www.nature.com/articles/nature03650},
	doi = {10.1038/nature03650},
	language = {en},
	number = {7046},
	urldate = {2021-07-26},
	journal = {Nature},
	author = {Murata, Yoshimichi and Iwasaki, Hirohide and Sasaki, Mari and Inaba, Kazuo and Okamura, Yasushi},
	month = jun,
	year = {2005},
	pages = {1239--1243},
}

@article{nakaya_experimental_2005,
	title = {Experimental allometry: effect of size manipulation on metabolic rate of colonial ascidians},
	volume = {272},
	issn = {0962-8452, 1471-2954},
	shorttitle = {Experimental allometry},
	url = {https://royalsocietypublishing.org/doi/10.1098/rspb.2005.3143},
	doi = {10.1098/rspb.2005.3143},
	abstract = {The allometric scaling of metabolic rate of organisms, the three-quarters power rule, has led to a questioning of the basis for the relation. We attacked this problem experimentally for the first time by employing the modular organism, the ascidian that forms a single layered flat colony, as a model system. The metabolic rate and colony size followed the three-quarters power relation, which held even after the colony size was experimentally manipulated. Our results established that the three-quarters power relation is a real continuous function, not an imaginary statistical regression. The fact that all the hypotheses failed to explain why the two-dimensional organism adhered to the three-quarters power relation led us to propose a new hypothesis, in which the allometric relation derives from the self-organized criticality based on local interaction between modulus-comprising organisms.},
	language = {en},
	number = {1575},
	urldate = {2021-07-26},
	journal = {Proceedings of the Royal Society B: Biological Sciences},
	author = {Nakaya, Fumio and Saito, Yasunori and Motokawa, Tatsuo},
	month = sep,
	year = {2005},
	pages = {1963--1969},
}

The allometric scaling of metabolic rate of organisms, the three-quarters power rule, has led to a questioning of the basis for the relation. We attacked this problem experimentally for the first time by employing the modular organism, the ascidian that forms a single layered flat colony, as a model system. The metabolic rate and colony size followed the three-quarters power relation, which held even after the colony size was experimentally manipulated. Our results established that the three-quarters power relation is a real continuous function, not an imaginary statistical regression. The fact that all the hypotheses failed to explain why the two-dimensional organism adhered to the three-quarters power relation led us to propose a new hypothesis, in which the allometric relation derives from the self-organized criticality based on local interaction between modulus-comprising organisms.

@article{nakayama_tissue-specific_2005,
	title = {Tissue-{Specific} {Profile} of {DNA} {Replication} in the {Swimming} {Larvae} of \textit{{Ciona} intestinalis}},
	volume = {22},
	issn = {0289-0003},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.22.301},
	doi = {10.2108/zsj.22.301},
	language = {en},
	number = {3},
	urldate = {2021-07-26},
	journal = {Zoological Science},
	author = {Nakayama, Akie and Satoh, Nori and Sasakura, Yasunori},
	month = mar,
	year = {2005},
	pages = {301--309},
}

@article{sasakura_transposon-mediated_2005,
	title = {Transposon-mediated insertional mutagenesis revealed the functions of animal cellulose synthase in the ascidian \textit{{Ciona} intestinalis}},
	volume = {102},
	issn = {0027-8424, 1091-6490},
	url = {http://www.pnas.org/cgi/doi/10.1073/pnas.0503640102},
	doi = {10.1073/pnas.0503640102},
	language = {en},
	number = {42},
	urldate = {2021-07-26},
	journal = {Proceedings of the National Academy of Sciences},
	author = {Sasakura, Y. and Nakashima, K. and Awazu, S. and Matsuoka, T. and Nakayama, A. and Azuma, J.-i. and Satoh, N.},
	month = oct,
	year = {2005},
	pages = {15134--15139},
}

@article{satouh_molecular_2005,
	title = {Molecular {Characterization} of {Radial} {Spoke} {Subcomplex} {Containing} {Radial} {Spoke} {Protein} 3 and {Heat} {Shock} {Protein} 40 in {Sperm} {Flagella} of the {Ascidian} \textit{{Ciona} intestinalis}},
	volume = {16},
	issn = {1059-1524, 1939-4586},
	url = {https://www.molbiolcell.org/doi/10.1091/mbc.e04-09-0784},
	doi = {10.1091/mbc.e04-09-0784},
	abstract = {Members of the heat-shock protein (HSP)40 regulate the protein folding activity of HSP70 proteins and help the functional specialization of this molecular chaperone system in various types of cellular events. We have recently identified Hsp40 as a component of flagellar axoneme in the ascidian Ciona intestinalis, suggesting a correlation between Hsp40 related chaperone system and flagellar function. In this study, we have found that Ciona 37-kDa Hsp40 is extracted from KCl-treated axonemes with 0.5 M KI solution and comigrates with radial spoke protein (RSP)3 along with several proteins as a complex through gel filtration and ion exchange columns. Peptide mass fingerprinting with matrix-assisted laser desorption ionization/time of flight/mass spectrometry revealed that other proteins in the complex include a homolog of sea urchin spokehead protein (homolog of RSP4/6), a membrane occupation and recognition nexus repeat protein with sequence similarity with meichroacidin, and a functionally unknown 33-kDa protein. A spoke head protein, LRR37, is not included in the complex, suggesting that the complex constructs the stalk of radial spoke. Immunoelectron microscopy indicates that Hsp40 is localized in the distal portion of spoke stalk, possibly at the junction between spoke head and the stalk.},
	language = {en},
	number = {2},
	urldate = {2021-07-26},
	journal = {Molecular Biology of the Cell},
	author = {Satouh, Yuhkoh and Padma, Potturi and Toda, Toshifusa and Satoh, Nori and Ide, Hiroyuki and Inaba, Kazuo},
	month = feb,
	year = {2005},
	pages = {626--636},
}

Members of the heat-shock protein (HSP)40 regulate the protein folding activity of HSP70 proteins and help the functional specialization of this molecular chaperone system in various types of cellular events. We have recently identified Hsp40 as a component of flagellar axoneme in the ascidian Ciona intestinalis, suggesting a correlation between Hsp40 related chaperone system and flagellar function. In this study, we have found that Ciona 37-kDa Hsp40 is extracted from KCl-treated axonemes with 0.5 M KI solution and comigrates with radial spoke protein (RSP)3 along with several proteins as a complex through gel filtration and ion exchange columns. Peptide mass fingerprinting with matrix-assisted laser desorption ionization/time of flight/mass spectrometry revealed that other proteins in the complex include a homolog of sea urchin spokehead protein (homolog of RSP4/6), a membrane occupation and recognition nexus repeat protein with sequence similarity with meichroacidin, and a functionally unknown 33-kDa protein. A spoke head protein, LRR37, is not included in the complex, suggesting that the complex constructs the stalk of radial spoke. Immunoelectron microscopy indicates that Hsp40 is localized in the distal portion of spoke stalk, possibly at the junction between spoke head and the stalk.

@article{shiba_sperm-activating_2005,
	title = {Sperm-{Activating} {Peptide} {Induces} {Asymmetric} {Flagellar} {Bending} in {Sea} {Urchin} {Sperm}},
	volume = {22},
	issn = {0289-0003},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.22.293},
	doi = {10.2108/zsj.22.293},
	language = {en},
	number = {3},
	urldate = {2021-07-26},
	journal = {Zoological Science},
	author = {Shiba, Kogiku and Ohmuro, Junko and Mogami, Yoshihiro and Nishigaki, Takuya and Wood, Christopher D. and Darszon, Alberto and Tatsu, Yoshiro and Yumoto, Noboru and Baba, Shoji A.},
	month = mar,
	year = {2005},
	pages = {293--299},
}

@article{__2005,
	title = {伊豆半島大浦湾におけるガラモ場の年間純生産量の推定},
	volume = {37},
	journal = {月刊海洋},
	author = {{三上温子} and {小松輝久} and {青木優和} and {横濱康継}},
	year = {2005},
	pages = {499--502},
}

@article{__2005-1,
	title = {東シナ海における流れ藻の分布},
	volume = {37},
	journal = {月刊海洋},
	author = {{小松輝久} and Fillipi, J.B. and {松永大輔} and {三上温子} and {佐川} and {石田健一} and {立川賢一} and {鰺坂哲朗} and {田中克彦} and {青木優和} and {杉本隆成}},
	year = {2005},
	pages = {522--526},
}

@article{__2005-2,
	title = {卵由来物質によるホヤ精子の運動制御機構},
	volume = {41},
	journal = {号外海洋},
	author = {{柴小菊} and {吉田}},
	year = {2005},
	pages = {98--104},
}

@article{__2005-3,
	title = {東シナ海で採集された流れ藻葉上性フクロエビ類について},
	volume = {37},
	journal = {月刊海洋},
	author = {{田中克彦} and {青木優和} and {小松輝久}},
	year = {2005},
	pages = {527--531},
}

@article{__2005-4,
	title = {境界動物の生物学—脊椎動物への進化の研究最前線—、ホヤ精巣における遺伝子発現とそれらの機能解析},
	volume = {41},
	journal = {月刊海洋},
	author = {{稲葉一男}},
	year = {2005},
	pages = {89--97},
}

@article{__2005-5,
	title = {ホンダワラ類と葉上性端脚類の関係},
	volume = {37},
	journal = {月刊海洋},
	author = {{青木優和} and {田中克彦} and {小松輝久}},
	year = {2005},
	pages = {503--508},
}

@article{awazu_enhancer_2004,
	title = {An enhancer trap in the ascidian \textit{{Ciona} intestinalis} identifies enhancers of its {Musashi} orthologous gene},
	volume = {275},
	issn = {00121606},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0012160604005858},
	doi = {10.1016/j.ydbio.2004.08.029},
	language = {en},
	number = {2},
	urldate = {2021-07-26},
	journal = {Developmental Biology},
	author = {Awazu, Satoko and Sasaki, Akane and Matsuoka, Terumi and Satoh, Nori and Sasakura, Yasunori},
	month = nov,
	year = {2004},
	pages = {459--472},
}

@article{hozumi_local_2004,
	title = {Local database and the search program for proteomic analysis of sperm proteins in the ascidian \textit{{Ciona} intestinalis}},
	volume = {319},
	issn = {0006291X},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0006291X04011283},
	doi = {10.1016/j.bbrc.2004.05.118},
	language = {en},
	number = {4},
	urldate = {2021-07-26},
	journal = {Biochemical and Biophysical Research Communications},
	author = {Hozumi, Akiko and Satouh, Yuhkoh and Ishibe, Daisuke and Kaizu, Maiko and Konno, Aru and Ushimaru, Yuji and Toda, Tosifusa and Inaba, Kazuo},
	month = jul,
	year = {2004},
	pages = {1241--1246},
}

@article{katow_5-ht_2004,
	title = {The 5-{HT} receptor cell is a new member of secondary mesenchyme cell descendants and forms a major blastocoelar network in sea urchin larvae},
	volume = {121},
	issn = {09254773},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0925477304000413},
	doi = {10.1016/j.mod.2004.03.005},
	language = {en},
	number = {4},
	urldate = {2021-07-26},
	journal = {Mechanisms of Development},
	author = {Katow, Hideki and Yaguchi, Shunsuke and Kiyomoto, Masato and Washio, Masahiko},
	month = apr,
	year = {2004},
	pages = {325--337},
}

@article{kho_expression_2004,
	title = {Expression of 17beta-hydroxysteroid dehydrogenease in testis of the ascidian \textit{{Ciona} intestinalis}},
	volume = {31},
	journal = {Molecules and Cells},
	author = {Kho, Kang Hee and Inaba, Kazuo},
	year = {2004},
	pages = {171--176},
}

@article{kumagai_transplantation_2004,
	title = {Transplantation of {Gorgonian} {Octocorals} for \textit{in situ} {Experimental} {Manipulations}},
	volume = {59},
	issn = {0289-4548, 1883-8901},
	url = {https://www.jstage.jst.go.jp/article/benthos1996/59/1/59_1_11/_article},
	doi = {10.5179/benthos1996.59.1_11},
	language = {en},
	number = {1},
	urldate = {2021-07-26},
	journal = {Benthos Research},
	author = {Kumagai, Naoki H. and Shinagawa, Hideo and Sato, Toshihiko and Tsuchiya, Yasutaka and Aoki, Masakazu N.},
	year = {2004},
	pages = {11--19},
}

@article{matsuoka_minos_2004,
	title = {\textit{{Minos}} transposon causes germline transgenesis of the ascidian \textit{{Ciona} savignyi}},
	volume = {46},
	issn = {0012-1592, 1440-169X},
	url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1440-169X.2004.00742.x},
	doi = {10.1111/j.1440-169X.2004.00742.x},
	language = {en},
	number = {3},
	urldate = {2021-07-26},
	journal = {Development, Growth and Differentiation},
	author = {Matsuoka, Terumi and Awazu, Satoko and Satoh, Nori and Sasakura, Yasunori},
	month = jun,
	year = {2004},
	pages = {249--255},
}

@article{nishigaki_sea_2004,
	title = {A sea urchin egg jelly peptide induces a {cGMP}-mediated decrease in sperm intracellular {Ca} 2+ before its increase},
	volume = {272},
	issn = {00121606},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0012160604003525},
	doi = {10.1016/j.ydbio.2004.04.035},
	language = {en},
	number = {2},
	urldate = {2021-07-26},
	journal = {Developmental Biology},
	author = {Nishigaki, Takuya and Wood, Christopher D. and Tatsu, Yoshiro and Yumoto, Noboru and Furuta, Toshiaki and Elias, David and Shiba, Kogiku and Baba, Shoji A. and Darszon, Alberto},
	month = aug,
	year = {2004},
	pages = {376--388},
}

@article{casey_dc3_2003,
	title = {{DC3}, the 21-{kDa} {Subunit} of the {Outer} {Dynein} {Arm}-{Docking} {Complex} ({ODA}-{DC}), {Is} a {Novel} {EF}-{Hand} {Protein} {Important} for {Assembly} of {Both} the {Outer} {Arm} and the {ODA}-{DC}},
	volume = {14},
	issn = {1059-1524, 1939-4586},
	url = {https://www.molbiolcell.org/doi/10.1091/mbc.e03-01-0057},
	doi = {10.1091/mbc.e03-01-0057},
	abstract = {The outer dynein arm-docking complex (ODA-DC) is a microtubule-associated structure that targets the outer dynein arm to its binding site on the flagellar axoneme ( Takada et al. 2002 . Mol. Biol. Cell 13, 1015–1029). The ODA-DC of Chlamydomonas contains three proteins, referred to as DC1, DC2, and DC3. We here report the isolation and sequencing of genomic and full-length cDNA clones encoding DC3. The sequence predicts a 21,341 Da protein with four EF-hands that is a member of the CTER (calmodulin, troponin C, essential and regulatory myosin light chains) group and is most closely related to a predicted protein from Plasmodium. The DC3 gene, termed ODA14, is intronless. Chlamydomonas mutants that lack DC3 exhibit slow, jerky swimming because of loss of some but not all outer dynein arms. Some outer doublet microtubules without arms had a “partial” docking complex, indicating that DC1 and DC2 can assemble in the absence of DC3. In contrast, DC3 cannot assemble in the absence of DC1 or DC2. Transformation of a DC3-deletion strain with the wild-type DC3 gene rescued both the motility phenotype and the structural defect, whereas a mutated DC3 gene was incompetent to rescue. The results indicate that DC3 is important for both outer arm and ODA-DC assembly.},
	language = {en},
	number = {9},
	urldate = {2021-07-26},
	journal = {Molecular Biology of the Cell},
	author = {Casey, Diane M. and Inaba, Kazuo and Pazour, Gregory J. and Takada, Saeko and Wakabayashi, Ken-ichi and Wilkerson, Curtis G. and Kamiya, Ritsu and Witman, George B.},
	month = sep,
	year = {2003},
	pages = {3650--3663},
}

The outer dynein arm-docking complex (ODA-DC) is a microtubule-associated structure that targets the outer dynein arm to its binding site on the flagellar axoneme ( Takada et al. 2002 . Mol. Biol. Cell 13, 1015–1029). The ODA-DC of Chlamydomonas contains three proteins, referred to as DC1, DC2, and DC3. We here report the isolation and sequencing of genomic and full-length cDNA clones encoding DC3. The sequence predicts a 21,341 Da protein with four EF-hands that is a member of the CTER (calmodulin, troponin C, essential and regulatory myosin light chains) group and is most closely related to a predicted protein from Plasmodium. The DC3 gene, termed ODA14, is intronless. Chlamydomonas mutants that lack DC3 exhibit slow, jerky swimming because of loss of some but not all outer dynein arms. Some outer doublet microtubules without arms had a “partial” docking complex, indicating that DC1 and DC2 can assemble in the absence of DC3. In contrast, DC3 cannot assemble in the absence of DC1 or DC2. Transformation of a DC3-deletion strain with the wild-type DC3 gene rescued both the motility phenotype and the structural defect, whereas a mutated DC3 gene was incompetent to rescue. The results indicate that DC3 is important for both outer arm and ODA-DC assembly.

@article{hirata_ecological_2003,
	title = {Ecological studies on the community of drifting seaweeds in the south‐eastern coastal waters of {Izu} {Peninsula}, central {Japan}. {II}: {Seasonal} changes in plants showing maximum stipe length in drifting seaweed communities},
	volume = {51},
	issn = {1322-0829},
	number = {3},
	journal = {Phycological Research},
	author = {Hirata, Tetsu and Tanaka, Jiro and Iwami, Tetsuo and Ohmi, Takashi and Dazai, Akihiro and Aoki, Masakazu and Ueda, Hajime and Tsuchiya, Yasutaka and Sato, Toshihiko and Yokohama, Yasutsugu},
	year = {2003},
	note = {Publisher: Wiley Online Library},
	pages = {186--191},
}

@article{hirose_ultrastructures_2003,
	title = {Ultrastructures and {Classification} of {Circulating} {Hemocytes} in 9 {Botryllid} {Ascidians} ({Chordata}: {Ascidiacea})},
	volume = {20},
	issn = {0289-0003},
	shorttitle = {Ultrastructures and {Classification} of {Circulating} {Hemocytes} in 9 {Botryllid} {Ascidians} ({Chordata}},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.20.647},
	doi = {10.2108/zsj.20.647},
	language = {en},
	number = {5},
	urldate = {2021-07-26},
	journal = {Zoological Science},
	author = {Hirose, Euichi and Shirae, Maki and Saito, Yasunori},
	month = may,
	year = {2003},
	pages = {647--656},
}

@article{inaba_molecular_2003,
	title = {Molecular {Architecture} of the {Sperm} {Flagella}: {Molecules} for {Motility} and {Signaling}},
	volume = {20},
	issn = {0289-0003},
	shorttitle = {Molecular {Architecture} of the {Sperm} {Flagella}},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.20.1043},
	doi = {10.2108/zsj.20.1043},
	language = {en},
	number = {9},
	urldate = {2021-07-26},
	journal = {Zoological Science},
	author = {Inaba, Kazuo},
	month = sep,
	year = {2003},
	pages = {1043--1056},
}

@article{inaba_control_2003,
	title = {Control of flatfish sperm motility by {CO} $_{\textrm{2}}$ and carbonic anhydrase: {Carbonic} {Anhydrase} and {Sperm} {Motility}},
	volume = {55},
	issn = {08861544},
	shorttitle = {Control of flatfish sperm motility by {CO} $_{\textrm{2}}$ and carbonic anhydrase},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/cm.10119},
	doi = {10.1002/cm.10119},
	language = {en},
	number = {3},
	urldate = {2021-07-26},
	journal = {Cell Motility and the Cytoskeleton},
	author = {Inaba, Kazuo and Dréanno, Catherine and Cosson, Jacky},
	month = jul,
	year = {2003},
	pages = {174--187},
}

@article{itoh_purification_2003,
	title = {Purification and {Characterization} of the 15-{kDa} {Protein} from the {Sperm} {Flagella} of {Salmonid} {Fishes}},
	volume = {24},
	issn = {0388-6107, 1880-313X},
	url = {https://www.jstage.jst.go.jp/article/biomedres/24/4/24_153/_article},
	doi = {10.2220/biomedres.24.153},
	language = {en},
	number = {4},
	urldate = {2021-07-26},
	journal = {Biomedical Research},
	author = {Itoh, Atsuko and Fujinoki, Masakatsu and Kawamura, Takeshi and Inaba, Kazuo and Ohtake, Hideki and Shimizu, Nobuyoshi and Morisawa, Masaaki},
	year = {2003},
	pages = {153--164},
}

@article{itoh_characterization_2003,
	title = {Characterization of a {cAMP}-dependent protein kinase catalytic subunit from rainbow trout spermatozoa},
	volume = {305},
	issn = {0006291X},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0006291X03008404},
	doi = {10.1016/S0006-291X(03)00840-4},
	language = {en},
	number = {4},
	urldate = {2021-07-26},
	journal = {Biochemical and Biophysical Research Communications},
	author = {Itoh, Atsuko and Inaba, Kazuo and Ohtake, Hideki and Fujinoki, Masakatsu and Morisawa, Masaaki},
	month = jun,
	year = {2003},
	pages = {855--861},
}

@article{krasznai_gadolinium_2003,
	title = {Gadolinium, a mechano-sensitive channel blocker, inhibits osmosis-initiated motility of sea- and freshwater fish sperm, but does not affect human or ascidian sperm motility: {Gadolinium} {Blocks} {Osmosis}-{Dependent} {Sperm} {Motility}},
	volume = {55},
	issn = {08861544},
	shorttitle = {Gadolinium, a mechano-sensitive channel blocker, inhibits osmosis-initiated motility of sea- and freshwater fish sperm, but does not affect human or ascidian sperm motility},
	url = {https://onlinelibrary.wiley.com/doi/10.1002/cm.10125},
	doi = {10.1002/cm.10125},
	language = {en},
	number = {4},
	urldate = {2021-07-26},
	journal = {Cell Motility and the Cytoskeleton},
	author = {Krasznai, Zoltán and Morisawa, Masaaki and Krasznai, Zoárd Tibor and Morisawa, Sachiko and Inaba, Kazuo and Bazsáné, Zsuzsa Kassai and Rubovszky, Bálint and Bodnár, Béla and Borsos, Antal and Márián, Teréz},
	month = aug,
	year = {2003},
	pages = {232--243},
}

@article{kumagai_seasonal_2003,
	title = {Seasonal changes in the epifaunal community on the shallow-water gorgonian \textit{{Melithaea} flabellifera}},
	volume = {83},
	issn = {1469-7769},
	number = {6},
	journal = {Journal of the Marine Biological Association of the United Kingdom},
	author = {Kumagai, Naoki H. and Aoki, Masakazu N.},
	year = {2003},
	note = {Publisher: Cambridge University Press},
	pages = {1221--1222},
}

@article{kurabayashi_phylogenetic_2003,
	title = {Phylogenetic {Position} of a {Deep}-{Sea} {Ascidian}, \textit{{Megalodicopia} hians}, {Inferred} from the {Molecular} {Data}},
	volume = {20},
	issn = {0289-0003},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.20.1243},
	doi = {10.2108/zsj.20.1243},
	language = {en},
	number = {10},
	urldate = {2021-07-26},
	journal = {Zoological Science},
	author = {Kurabayashi, Atsushi and Okuyama, Makiko and Ogawa, Mari and Takeuchi, Akira and Jing, Zhang and Naganuma, Takeshi and Saito, Yasunori},
	month = oct,
	year = {2003},
	pages = {1243--1247},
}

@article{nakaya_switching_2003,
	title = {Switching of metabolic–rate scaling between allometry and isometry in colonial ascidians},
	volume = {270},
	issn = {0962-8452, 1471-2954},
	url = {https://royalsocietypublishing.org/doi/10.1098/rspb.2003.2347},
	doi = {10.1098/rspb.2003.2347},
	language = {en},
	number = {1520},
	urldate = {2021-07-26},
	journal = {Proceedings of the Royal Society of London. Series B: Biological Sciences},
	author = {Nakaya, F. and Saito, Y. and Motokawa, T.},
	month = jun,
	year = {2003},
	pages = {1105--1113},
}

@article{ogawa_sperm_2003,
	title = {Sperm motility-activating complex formed by t-complex distorters},
	volume = {310},
	issn = {0006291X},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0006291X03019466},
	doi = {10.1016/j.bbrc.2003.09.137},
	language = {en},
	number = {4},
	urldate = {2021-07-26},
	journal = {Biochemical and Biophysical Research Communications},
	author = {Ogawa, Kazuo and Inaba, Kazuo},
	month = oct,
	year = {2003},
	pages = {1155--1159},
}

@article{ogawa_ester-linked_2003,
	title = {Ester-linked phospholipid fatty acids in marine sediments: {Testing} the possibility of methane seepage in the {Japan} {Sea}},
	volume = {6},
	issn = {1463-4988},
	number = {4},
	journal = {Aquatic Ecosystem Health \& Management},
	author = {Ogawa, Mari and Tanimoto, Daisuke and Okamoto, Takuji and Saito, Yasunori and Jing, Zhang and Takeuchi, Akira and Naganuma, Takeshi},
	year = {2003},
	note = {Publisher: Taylor \& Francis},
	pages = {397--408},
}

@article{padma_identification_2003,
	title = {Identification of a novel leucine-rich repeat protein as a component of flagellar radial spoke in the ascidian \textit{{Ciona} intestinalis}},
	volume = {14},
	issn = {1059-1524},
	number = {2},
	journal = {Molecular biology of the cell},
	author = {Padma, Potturi and Satouh, Yuhkoh and Wakabayashi, Ken-ichi and Hozumi, Akiko and Ushimaru, Yuji and Kamiya, Ritsu and Inaba, Kazuo},
	year = {2003},
	note = {Publisher: Am Soc Cell Biol},
	pages = {774--785},
}

@article{saito_xenogeneic_2003,
	title = {Xenogeneic {Rejection} among {Three} {Botryllids} ({Compound} {Ascidians})},
	volume = {20},
	issn = {0289-0003},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.20.581},
	doi = {10.2108/zsj.20.581},
	language = {en},
	number = {5},
	urldate = {2021-07-26},
	journal = {Zoological Science},
	author = {Saito, Yasunori},
	month = may,
	year = {2003},
	pages = {581--589},
}

@article{saito_studies_2003-1,
	title = {Studies on {Japanese} {Botryllid} {Ascidians}. {III}. {A} {New} {Species} of the {Genus} \textit{{Botryllus}} with a {Vivid} {Colony} {Color} from the {Vicinity} of {Shimoda}},
	volume = {20},
	issn = {0289-0003},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.20.765},
	doi = {10.2108/zsj.20.765},
	language = {en},
	number = {6},
	urldate = {2021-07-26},
	journal = {Zoological Science},
	author = {Saito, Yasunori and Nagasawa, Naoko},
	month = jun,
	year = {2003},
	pages = {765--771},
}

@article{saito_studies_2003,
	title = {Studies on {Japanese} {Botryllid} {Ascidians}. {IV}. {A} {New} {Species} of the {Genus} \textit{{Botryllus}} with a {Unique} {Colony} {Shape}, from the {Vicinity} of {Shimoda}},
	volume = {20},
	issn = {0289-0003},
	url = {http://www.bioone.org/doi/abs/10.2108/zsj.20.1153},
	doi = {10.2108/zsj.20.1153},
	language = {en},
	number = {9},
	urldate = {2021-07-26},
	journal = {Zoological Science},
	author = {Saito, Yasunori and Okuyama, Makiko},
	month = sep,
	year = {2003},
	pages = {1153--1161},
}

@article{sasakura_application_2003,
	title = {Application of \textit{{Minos}}, one of the {Tc1}/mariner superfamily transposable elements, to ascidian embryos as a tool for insertional mutagenesis},
	volume = {308},
	issn = {03781119},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0378111903004268},
	doi = {10.1016/S0378-1119(03)00426-8},
	language = {en},
	urldate = {2021-07-26},
	journal = {Gene},
	author = {Sasakura, Yasunori and Awazu, Satoko and Chiba, Shota and Kano, Shungo and Satoh, Nori},
	month = apr,
	year = {2003},
	pages = {11--20},
}

@article{sasakura_germ-line_2003,
	title = {Germ-line transgenesis of the {Tc1}/mariner superfamily transposon \textit{{Minos}} in \textit{{Ciona} intestinalis}},
	volume = {100},
	issn = {0027-8424, 1091-6490},
	url = {http://www.pnas.org/cgi/doi/10.1073/pnas.1230736100},
	doi = {10.1073/pnas.1230736100},
	language = {en},
	number = {13},
	urldate = {2021-07-26},
	journal = {Proceedings of the National Academy of Sciences},
	author = {Sasakura, Y. and Awazu, S. and Chiba, S. and Satoh, N.},
	month = jun,
	year = {2003},
	pages = {7726--7730},
}

@article{sasakura_genomewide_2003-1,
	title = {A genomewide survey of developmentally relevant genes in \textit{{Ciona} intestinalis}: {X}. {Genes} for cell junctions and extracellular matrix},
	volume = {213},
	issn = {0949-944X, 1432-041X},
	shorttitle = {A genomewide survey of developmentally relevant genes in {Ciona} intestinalis},
	url = {http://link.springer.com/10.1007/s00427-003-0320-1},
	doi = {10.1007/s00427-003-0320-1},
	language = {en},
	number = {5-6},
	urldate = {2021-07-26},
	journal = {Development Genes and Evolution},
	author = {Sasakura, Yasunori and Shoguchi, Eiichi and Takatori, Naohito and Wada, Shuichi and Meinertzhagen, Ian A. and Satou, Yutaka and Satoh, Nori},
	month = jun,
	year = {2003},
	keywords = {wrongWada},
	pages = {303--313},
}

@article{sasakura_genomewide_2003,
	title = {A genomewide survey of developmentally relevant genes in \textit{{Ciona} intestinalis}: {VII}. {Molecules} involved in the regulation of cell polarity and actin dynamics},
	volume = {213},
	issn = {0949-944X, 1432-041X},
	shorttitle = {A genomewide survey of developmentally relevant genes in {Ciona} intestinalis},
	url = {http://link.springer.com/10.1007/s00427-003-0325-9},
	doi = {10.1007/s00427-003-0325-9},
	language = {en},
	number = {5-6},
	urldate = {2021-07-26},
	journal = {Development Genes and Evolution},
	author = {Sasakura, Yasunori and Yamada, Lixy and Takatori, Naohito and Satou, Yutaka and Satoh, Nori},
	month = jun,
	year = {2003},
	pages = {273--283},
}

@article{satou_genomewide_2003,
	title = {A genomewide survey of developmentally relevant genes in \textit{{Ciona} intestinalis}},
	volume = {213},
	issn = {1432-041X},
	number = {5},
	journal = {Development genes and evolution},
	author = {Satou, Yutaka and Sasakura, Yasunori and Yamada, Lixy and Imai, Kaoru S and Satoh, Nori and Degnan, Bernard},
	year = {2003},
	note = {Publisher: Springer},
	pages = {254--263},
}

@article{serisawa_growth_2003,
	title = {Growth and survival rates of large-type sporophytes of \textit{{Ecklonia} cava} transplanted to a growth environment with small-type sporophytes},
	volume = {15},
	issn = {1573-5176},
	number = {4},
	journal = {Journal of applied phycology},
	author = {Serisawa, Yukihiko and Aoki, Masakazu and Hirata, Tetsu and Bellgrove, Alecia and Kurashima, Akira and Tsuchiya, Yasutaka and Sato, Toshihiko and Ueda, Hajime and Yokohama, Yasutsugu},
	year = {2003},
	note = {Publisher: Springer},
	pages = {311--318},
}

@article{yaguchi_expression_2003,
	title = {Expression of tryptophan 5‐hydroxylase gene during sea urchin neurogenesis and role of serotonergic nervous system in larval behavior},
	volume = {466},
	issn = {0021-9967},
	number = {2},
	journal = {Journal of Comparative Neurology},
	author = {Yaguchi, Shunsuke and Katow, Hideki},
	year = {2003},
	note = {Publisher: Wiley Online Library},
	pages = {219--229},
}

@article{__2003-1,
	title = {静岡県下田市田牛地先の異なる水深における褐藻カジメ・アラメ群落の特徴},
	volume = {51},
	issn = {0371-4217},
	number = {3},
	journal = {水産増殖},
	author = {{芹澤如比古} and {村上裕重} and {田中次郎} and {青木優和} and {坂西芳彦} and {平田徹} and {御園生拓} and {横浜康継}},
	year = {2003},
	note = {Publisher: 日本水産増殖学会},
	pages = {287--294},
}

@article{__2003,
	title = {大型褐藻類に穿孔造巣する端脚類の生態},
	volume = {28},
	journal = {大槌臨海研究センター研究報告},
	author = {{青木優和}},
	year = {2003},
	pages = {12},
}

@article{aoki_progress_2002,
	title = {Progress report of \textit{{Ecklonia} cava} underwater forest survey in {Touji}, {Shimoda} {City}},
	volume = {50},
	journal = {Algae},
	author = {Aoki, Yukazu},
	year = {2002},
	pages = {43},
}

@article{dehal_draft_2002,
	title = {The draft genome of \textit{{Ciona} intestinalis}: insights into chordate and vertebrate origins},
	volume = {298},
	issn = {0036-8075},
	number = {5601},
	journal = {Science},
	author = {Dehal, Paramvir and Satou, Yutaka and Campbell, Robert K and Chapman, Jarrod and Degnan, Bernard and De Tomaso, Anthony and Davidson, Brad and Di Gregorio, Anna and Gelpke, Maarten and Goodstein, David M},
	year = {2002},
	note = {Publisher: American Association for the Advancement of Science},
	pages = {2157--2167},
}

@article{hirose_colony_2002,
	title = {Colony specificity in the xenogeneic combinations among four {Botrylloides} species ({Urochordata}, {Ascidiacea})},
	volume = {19},
	issn = {0289-0003},
	number = {7},
	journal = {Zoological science},
	author = {Hirose, Euichi and Shirae, Maki and Saito, Yasunori},
	year = {2002},
	note = {Publisher: BioOne},
	pages = {747--753},
}

@article{inaba_dephosphorylation_2002,
	title = {Dephosphorylation of {Tctex2}-related dynein light chain by type {2A} protein phosphatase},
	volume = {297},
	issn = {0006-291X},
	number = {4},
	journal = {Biochemical and biophysical research communications},
	author = {Inaba, Kazuo},
	year = {2002},
	note = {Publisher: Elsevier},
	pages = {800--805},
}

@article{inaba_est_2002,
	title = {{EST} analysis of gene expression in testis of the ascidian \textit{{Ciona} intestinalis}},
	volume = {62},
	issn = {1040-452X},
	number = {4},
	journal = {Molecular reproduction and development},
	author = {Inaba, Kazuo and Padma, Potturi and Satouh, Yuhkoh and Shin‐i, Tadasu and Kohara, Yuji and Satoh, Nori and Satou, Yutaka},
	year = {2002},
	note = {Publisher: Wiley Online Library},
	pages = {431--445},
}

@article{okuyama_studies_2002,
	title = {Studies on {Japanese} botryllid ascidians. {II}. {A} new species of the genus \textit{{Botryllus}} from the vicinity of {Shimoda}},
	volume = {19},
	issn = {0289-0003},
	number = {7},
	journal = {Zoological science},
	author = {Okuyama, Makiko and Saito, Yasunori},
	year = {2002},
	note = {Publisher: BioOne},
	pages = {809--815},
}

@article{okuyama_fusion_2002,
	title = {Fusion between incompatible colonies of a viviparous ascidian, \textit{{Botrylloides} lentus}},
	volume = {121},
	issn = {1077-8306},
	number = {2},
	journal = {Invertebrate Biology},
	author = {Okuyama, Makiko and Saito, Yasunori and Hirose, Euichi},
	year = {2002},
	note = {Publisher: Wiley Online Library},
	pages = {163--169},
}

@article{okuyama_morphological_2002,
	title = {Morphological studies on the bathyal ascidian, \textit{{Megalodicopia} hians} {Oka} 1918 ({Octacnemidae}, {Phlebobranchia}), with remarks on feeding and tunic morphology},
	volume = {19},
	issn = {0289-0003},
	number = {10},
	journal = {Zoological science},
	author = {Okuyama, Makiko and Saito, Yasunori and Ogawa, Mari and Takeuchi, Akira and Jing, Zhang and Naganuma, Takeshi and Hirose, Euichi},
	year = {2002},
	note = {Publisher: BioOne},
	pages = {1181--1189},
}

@article{sasakura_identification_2002,
	title = {Identification of cis elements which direct the localization of maternal {mRNAs} to the posterior pole of ascidian embryos},
	volume = {250},
	issn = {0012-1606},
	number = {1},
	journal = {Developmental biology},
	author = {Sasakura, Yasunori and Makabe, Kazuhiro W},
	year = {2002},
	note = {Publisher: Elsevier},
	pages = {128--144},
}

@article{satou_cdna_2002,
	title = {A {cDNA} resource from the basal chordate \textit{{Ciona} intestinalis}},
	volume = {33},
	issn = {1526-954X},
	number = {4},
	journal = {genesis},
	author = {Satou, Yutaka and Yamada, Lixy and Mochizuki, Yasuaki and Takatori, Naohito and Kawashima, Takeshi and Sasaki, Akane and Hamaguchi, Makoto and Awazu, Satoko and Yagi, Kasumi and Sasakura, Yasunori},
	year = {2002},
	note = {Publisher: Wiley Online Library},
	pages = {153--154},
}

@article{shiba_ciliary_2002,
	title = {Ciliary movement of sea-urchin embryos},
	volume = {53},
	number = {1},
	journal = {Nat Sci Rep Ochanomizu Univ},
	author = {Shiba, Kogiku and Mogami, Yoshihiro and Baba, Shoji A},
	year = {2002},
	note = {Publisher: Citeseer},
	pages = {49--54},
}

@article{shirae_involvement_2002,
	title = {Involvement of quinones and phenoloxidase in the allorejection reaction in a colonial ascidian, \textit{{Botrylloides} simodensis}: histochemical and immunohistochemical study},
	volume = {141},
	issn = {1432-1793},
	number = {4},
	journal = {Marine Biology},
	author = {Shirae, M and Ballarin, L and Frizzo, A and Saito, Y and Hirose, E},
	year = {2002},
	note = {Publisher: Springer},
	pages = {659--665},
}

@article{yoda_comparative_2002,
	title = {Comparative study of benthic and pelagic populations of \textit{{Bodotria} similis} ({Cumacea}) from {Izu} peninsula, southern {Japan}},
	volume = {22},
	issn = {0278-0372},
	number = {3},
	journal = {Journal of Crustacean Biology},
	author = {Yoda, Mari and Aoki, Masakazu},
	year = {2002},
	note = {Publisher: Oxford University Press},
	pages = {543--552},
}

@article{yoshida_chemoattractant_2002,
	title = {A chemoattractant for ascidian spermatozoa is a sulfated steroid},
	volume = {99},
	issn = {0027-8424},
	number = {23},
	journal = {Proceedings of the National Academy of Sciences},
	author = {Yoshida, Manabu and Murata, Michio and Inaba, Kazuo and Morisawa, Masaaki},
	year = {2002},
	note = {Publisher: National Acad Sciences},
	pages = {14831--14836},
}