Aligment data used in

"Phylogenetic position of a deep-sea ascidian, Megalodicopia hians,

  inferred from the molecular data (2003)".

 

Species

ingroup
Cio_int = Ciona intestinalis
Che_sibo = Chelyosoma siboya
Mega_hia = Megalodicopia  hians
Per_sagami = Perophora sagamiensis
Asc_ahodri = Ascidia ahodori

outgroup
Hal_ro = Halocynthia roretzi
Sty_pli = Styela plicata
 
 
 

Dataset1: 1,667 nucleotide sites from 7 ascidians (nexus format) 

-------------------------------------------------------------------- -------------------

#NEXUS
[1667_18SrDNA.nex -- data title]

[Name: Cio_int           Len:  1667  Check:  7E0816E]
[Name: Che_sibo          Len:  1667  Check: 11280EB2]
[Name: Mega_hia          Len:  1667  Check:  BEDAD88]
[Name: Per_sagami        Len:  1667  Check: D90A3528]
[Name: Asc_ahodri        Len:  1667  Check: 86827B0F]
[Name: Hal_ro            Len:  1667  Check:  6E91415]
[Name: Sty_pli           Len:  1667  Check: 23C44E93]
 

begin data;
 dimensions ntax=7 nchar=1667;
 format datatype=dna interleave missing=-;
 matrix
  Cio_int  AAGATTAAGCCATGCAAGTC TAAGTACGAGCTCTCGTACA GCGAAACTGCGAATGGCTCA TTAAATCAGTTATGGTTCAT TTGATCGTATGGTTTACTTG
 Che_sibo  AAGATTAAGCCATGCAAGTG TCCGTACGAGCTCTCGTACA GTGAAACTGCGAATGGCTCA TTAAATCAGTCGTGATTCAT TTGATCGTACGTTTTACTTG
 Mega_hia  AAGATTAAGCCATGCAGGTG CAAGTACGAACTCTCGTACA GTGAAGCTGCGAATGGCTCA TTAAATCAGTCGTGATTTAT TTGGTCGTACGTTTTACTTG
Per_sagam  AAGATTAAGCCATGCAAGTC TAAGTACGAGCTCCCGTACA GTGAAACTGCGAATGGCTCA TTAAATCAGTTATGGTTCAT TTGATCGTACGTGTTACTTG
Asc_ahodr  AAGATTAAGCCATGCAAGTC TAAGTACGCGCTCTCGTACA GTGAAACTGCGAATGGCTCA TTAAATCAGTTATGGTTCAT TTGATCGTACATCGTACGTG
   Hal_ro  AAGATTAAGCCATGCAGGTC TAAGTACGAGTTGTCGTAAA GCGAAACTGCGAACGGCTCA TTAAATCAGTCTTGGTTTAT TTGGTCTTGTGTTGCAAGTG
  Sty_pli  AAGATTAAGCCATGCAGGTG CAAGTACGAGTTGTCGTAAA GCGAAACTGCGAATGGCTCA TTAAATCAGTCTTGGTTTAT TTGGTCTCGAAAGCTAAGTG

  Cio_int  GATAACTGTGGTAATTCTAG AGCTAATACATGCCAGCGCC GACTTCGGGGCGTGCTTTTA TCAGACCAAAACCGACCGCG TGGTGACTCTGGATAACCTG
 Che_sibo  GATAACTGTGGTAATTCTAG AGCTAATACATGCAAGCGCC GACCTCGGGGCGTGCTTTTA TCAGACCAAAACCGACCGGG TGGTGACTCTGGATAACTTT
 Mega_hia  GATAACTGTGGTAATTCTAG AGCTAATACATGCGAGCGCC GACCTCGGGGCGTGCTTTTA TCAGACCAAAACCGACCGGG TGGTGACTCTGGATAACTTT
Per_sagam  GATAACTGTGGAAATGCTAG AGCTAATACATGCGAGCGCC GACCTCGGGGCGTGCTTTTA TCAGACCAAAACCGACCGGG TGGTGACTCTGGATAACTTG
Asc_ahodr  GATACCTGTACAAAATCTAG AGCTAATACATGCAAGCGCC TGCCTCGGGGTGTGCATTTA TCAGTCCAAAACCGACCGGG TGGTGACTCTGGGTAACTCA
   Hal_ro  GATAACTGTGGTAATTCTAG AGCTAATACATGCAAGCGCC GACTCCGGGGCGTGCTTTTA TCAGATCAAAACCGACCGGG TGATGACTCTGGATAACCAC
  Sty_pli  GATAACTGTGGTAATTCTAG AGCTAATACATGCAAGCGCC GACTTCGGGGCGCGCTTTTA TCAGATCAAAACCGACCGGG TGATGACTCTGGATAACCAC

  Cio_int  GCGGATCGCACGGTCTGCAC CGGCGACGGATCATTCAAGT GTCTGCCCTATCAACTTTCG TCGGTACGGTATTCGCCTAC CGAGTTCTTACGGGTAACGG
 Che_sibo  GCGGATCGCACGGTCTGCAC CGGCGACGGATCATTCAAGT GTCTGCCCTATCAACTTTCG TCGGTACGGTATCTGCCTAC CGAGTTCTTACGGGTAACGG
 Mega_hia  GCGGATCGCACGGTCTGTAC CGGCGACGGATCATTCAAGT GTCTGCCCTATCAACTTTCG TCGGTACGGTATCTGCCTAC CGAGTTCTTACGGGTAACGG
Per_sagam  GCGGATCGCACGGTCTGTAC CGGCGACGGATCATTCAAGT GTCTGCCCTATCAACTTTCG TCGGTACGGTATTGGCCTAC CGAGTTCTTACGGGTAACGG
Asc_ahodr  GCGGATCGCACGGTCTGCAC CGGCGACGGATCATTCAAGT GTCTGCCCTATCAACTTTCG TCGGTAGGGTATCGGCCTAC CGAGTTCTTACGGGTGACGG
   Hal_ro  GCGGATCGTATGGTCTGTAC CGACGACGAATCATTCAAGT GTCTGCCCTATCAACTTTCG AAGGTAGCTTACGTGCCTAC CTTTTGATAACGGGTGACGG
  Sty_pli  GCGGATCGTACGGTCTGCAC CGACGACGTATCATTCAAGT GTCTGCCCTATCAACTGTCG AAGGTACGCTACTTGCCTAC CTTTTGATAACGGGTAACGG

  Cio_int  GGAATCAGGGTTCGATTCCG GAGAGGGAGCCTGAGAAACG GCTACCACATCCAAGGAAGG CAGCAGGCGCGCAAATTACC CATTCCCGACGCGGGGAGGT
 Che_sibo  GGAATCAGGGTTCGATTCCG GAGAGGGAGCCTGAGAAACG GCTACCACATCCAAGGAAGG CAGCAGGCGCGCAAATTACC CATTCCCGACACGGGGAGGT
 Mega_hia  GGAATCAGGGTTCGATTCCG GAGAGGGAGCCTGAGAAACG GCTACCACATCCAAGGAAGG CAGCAGGCGCGCAAATTACC CATTCCCGACACGGGGAGGT
Per_sagam  GGAATCAGGGTTCGATTCCG GAGAGGGAGCCTGAGAAACG GCTACCACATCCAAGGAAGG CAGCAGGCGCGCAAATTACC CATTCCCGACGCGGGGAGGT
Asc_ahodr  GGAATCAGGGTTCGATTCCG GAGAGGGAGCCTGAGAAACG GCTACCACATCCAAGGAAGG CAGCAGGCGCGCAAATTACC CATTCCCGACGCGGGGAGGT
   Hal_ro  AGAATCAGGGTTTGATTCCG GAGAGGGAGCCTGAGAAACG GCTACCACATCCAAGGAAGG CAGCAGGCGGGCAAATTACC CATTCCCGACACGGGGAGGT
  Sty_pli  GGAATCAGGGTTCGATTCCG GAGAGGGAGCCTGAGAAACG GCTACCACATCCAAGGAAGG CAGCAGGCGCGCAAATTACC CATTCCCGACACGGGGAGGT

  Cio_int  AGTGACGAAAAATAACAATG CAGGACTCCGAGGCCCTGTA ATTGGAATGAGTACACTTTA AAAGCTTTAACGAGTATCCA TTGGAGGGCAAGTCTGGTGC
 Che_sibo  AGTGACGAAAAATAACAATA CAGGACTCCGAGGCCCTGTA ATTGGAATGAGTACACTTTA AAACCTTTAACGAGTATCCA TTGGAGGGCAAGTCTGGTGC
 Mega_hia  AGTGACGAAAAATAACAATA CAGGACTCCGAGGCCCTGTA ATTGGAATGAGTACACTTCA AAAACTTTAACGAGTATCCA TTGGAGGGCAAGTCTGGTGC
Per_sagam  AGTGACGAAAAATAACAATA CAGGACTCCGAGGCCCTGTA ATTGGAATGAGTACACTTTA AAACCTTTAACGAGTATCCA TTGGAGGGCAAGTCTGGTGC
Asc_ahodr  AGTGACGAAAAATAACAATA CAGGACTCCGAGGCCCTGTA ATTGGAATGAGCACACTTTA AAACCTTTAACGAGTATCCA TTGGAGGGCAAGTCTGGTGC
   Hal_ro  AGTGACGAAAAATAACAATA CAGGACTCCGAGTCCCTGTA ATTGGAATGAGTACATTCTA AACCCTTTAACGAGTATCCA TTGGAGGGCAAGTCTGGTGC
  Sty_pli  AGTGACGAAAAATAACAATA CAGGACTCCGAGGCCCTGTA ATTGGAATGAGTACATCCTA AAACTCTTAACGAGTATCCA TTGGAGGGCAAGTCTGGTGC

  Cio_int  CAGCAGCCGCGGTAATTCCA GCTCCAAAAGTATATATTTA AGTTGTTGCGGTTGAAAAGC TCGTAGTTGGATTTTGGGCG CGGGCGGTCGGTCCGTCGCG
 Che_sibo  CAGCAGCCGCGGTAATTCCA GCTCCAAAAGTGTATATTTA AGTTGTTGCGGTTAAAAAGC TCGTAGTTGGATTTTGGGCG CAGTCGTTCGGTCCGTCGCA
 Mega_hia  CAGCAGCCGCGGTAATTCCA GCTCCAAAAGTGTATATTTA AGTTGTTGCGGTTAAAAAGC TCGTAGTTGGATTTTGGGCG CAGTCGGTCGGTCCGTCGCA
Per_sagam  CAGCAGCCGCGGTAATTCCA GCTCCAAAAGTGTATATTTA AGTTGCTGCGGTTAAAAAGC TCGTAGTTGGATTTTGGGCG CAGGCGGCCGGTCCGTCGCA
Asc_ahodr  CAGCAGCCGCGGTAATTCCA GCTCCAAAAGTGTATATTTA AGTTGTTGCGGTTAAAAAGC TCGTAGTTGGATCTTGGGCG CAGGCGGCCGGTCCGTCGCA
   Hal_ro  CAGCAGCCGCGGTAATTCCA GCTCCAACAGTGTATGCTAA AGTTGTTGCGGTTGAAAAGC TCGTAGTTGGATCTTGGGTG GGTGCAGCCGGTCCGTCGCA
  Sty_pli  CAGCAGCCGCGGTAATTCCA GCTCCAACAGTGTATGCTAA AGTTGTTGCGGTTGAAAAGC TCGTAGTTGGATTTTGGGCG AGCGCAGCCGGTCCGTCGCA

  Cio_int  AGGCGTGACTGGTCGGCCTC GTCCGGTTCTCCGGCGGTGC TCTTGACTGAGTGTCGGCGG CGGCCGGAAAGTTTACTTTG AAAAAATTAGAGTGTTCAAA
 Che_sibo  AGGCGTGACTGATCGGCCTC CTCCGGTTCTCCGCCGGTGC TCTTGACTGAGTGTCGGCGG CGGCCGGGACGTTTACTTTG AAAAAATTAGAGTGTTCAAA
 Mega_hia  AGGCGTGACTGATCGGCCTC CTCCGGTTCTCCGCCGGTGC TCTTGACTGAGTGTCGGCGG CGGCCGGGACGTTTACTTTG AAAAAATTAGAGTGTTCAAG
Per_sagam  AGGCGTGACTGGCCGGCCTC CTTCGGTTCCCCGCCGGTGC TCTTGACTGAGTGTCGGCGG CGGCCGGAACGTTTACTTTG AAAAAATTAGAGTGTTCAAA
Asc_ahodr  AGGCGTGACTGGCCGGCCCC CCCCGGCACTCCGCCGGTGC CCTTGACTGAGTGTCGGCGG CGGCCGGGACGTTTACTTTG AAAAAATTAGAGTGTTCAAA
   Hal_ro  AGGCGTGACTGGCTGGCCTC CTTCGGTTCTCCGTCGGTGC TCTTGACTGAGTGTCGGCGG TGGCCGATAAGTTTACTTTG AAAAAATTAGAGTGTTCAAA
  Sty_pli  GGGCGTGACTGGTTGGCCTC CTTCGGTTCTCCGTCGGTGC TCTTGACTGAGTGTCGGCGG TGGCCGATAAGTTTACTTTG AAAAAATTAGAGTGTTCAAA

  Cio_int  GCAGGCGCCTGAATAATGGT GCATGGAATAATGGAATAGG ACCTCGGTTCTATTTTGTTG GTTTTCGGAGCGCGAGGTAA TGATTAAGAGGGACAGACGG
 Che_sibo  GCAGGCGCCTGAATAATGGT GCATGGAATAATGGAATAGG ACCTCGGTTCTATTTTGTTG GTTTTCGGAGCGCGAGGTAA TGATTAAGAGGGACAGACGG
 Mega_hia  GCAGGCGCCTGAATAATGGT GCATGGAATAATGGAATAGG ACCTCGGTTCTATTTTGTTG GTTTTCGGAGCGCGAGGTAA TGATTAAGAGGGACAGACGG
Per_sagam  GCAGGCGCCTGAATAATGGT GCATGGAATAATGGAATAGG ACCTCGGTTCTATTTTGTTG GTTTTCGGAGCGCGAGGTAA TGATTAAGAGGGACAGACGG
Asc_ahodr  GCAGGCGCCTGAATAATGGT GCATGGAATAATGGAATAGG ACCTCGGTTCTATTTTGTTG GTTTTCGGAGCGCGAGGTAA TGATTAAGAGGGACGGACGG
   Hal_ro  GCAGGCGCCTGAATAGTGTT GCATGGAATAATGGAATAGG ACCTCGGTTCTATTTTGTTG GTTTTCGGAGCGCGAGGTAA TGATTAAGAGGGACAGACGG
  Sty_pli  GCAGGCGCCTGCATAGTGTT GCATGGAATAATGGAATAGG ACCTCGGTTCTATTTTGTTG GTTTTCGGAGCACGAGGTAA TGATTAAGAGGGACAGACGG

  Cio_int  GGGCATTCGTACTGTGCCGT TAGAGGTGAAATTCTTGGAT CGGCGCAAGACGAACGACTG CGAAAGCATTTGCCAAGAAT GTTTTCTTTAATCAAGAGCG
 Che_sibo  GGGCATTCGTACTGTGCCGT TAGAGGTGAAATTCTTGGAT CGGCGCAAGACGAGCGACTG CGAAAGCATTTGCCAAGAAT GTTTTCTTTAATCAAGAGCG
 Mega_hia  GGGCATTCGTACTGTGCCGT TAGAGGTGAAATTCTTGGAT CGGCGCAAGACGAACGACTG CGAAAGCATTTGCCAAGAAT GTTTTCTTTAATCAAGAGCG
Per_sagam  GGGCATTCGTACTGTGCCGC TAGAGGTGAAATTCTTGGAT CGGCGCAAGACGAACGACTG CGAAAGCATTTGCCAAGAAT GTTTTCTTTAATCAAGAGCG
Asc_ahodr  GGGCATTCGTACTGTGCCGC TAGAGGTGAAATTCTTGGAT CGGCGCAAGACGAGCGACTG CGAAAGCATTTGCCAAGAAT GTTTTCTTTAATCAAGAGCG
   Hal_ro  GGGCGTCCGTACTCTGCCGT TAGAGGTGAAATTCTTGGAT CGGCGGAAGACGAACTACTG CGAAAGCATTCGCCAAGAAT GTTTTCTTTAATCAAGAGCG
  Sty_pli  GGGCGTCCGTACTCTGCCGT TAGAGGTGAAATTCTTGGAT CGGCGGAAGACGAACTACTG CGAAAGCATTCGCCAAGAAT GTTTTCTTTAATCAAGAGCG

  Cio_int  AAAGTCAGAGGTTCGAAGAC GATCAGATACCGTCCTAGTT CTGACTATAAACGATGCCAA CTAGCGATCGGGGAGCGTTA ATTTGACGACCTCCCCGGCA
 Che_sibo  AAAGTCAGAGGTTCGAAGAC GATCAGATACCGTCCTAGTT CTGACTATAAACGATGCCAA CTAGCGATCGGGGAGCGTTA CTTTGACGACCTCTCCGGCA
 Mega_hia  AAAGTCAGAGGTTCGAAGAC GATCAGATACCGTCCTAGTT CTGACTATAAACGATGCCAA CTAGCGATCGGGGAGCGTTA CTTTGACGACCTCTCCGGCA
Per_sagam  AAAGTCAGAGGTTCGAAGAC GATCAGATACCGTCCTAGTT CTGACTATAAACGATGCCAA CTAGCGATCGGGGGGCGTTA GTTTGACGACCTCCCCGGCA
Asc_ahodr  AAAGTCAGAGGTTCGAAGAC GATCAGATACCGTCCTAGTT CTGACTATAAACGATGCCAA CCAGCGATCGGGGAGCGTTA GTTTGACGACCTCCCCGGCA
   Hal_ro  AAAGTCAGAGGTTCGAAGAC GATCAGATACCGTCCTAGTT CTGACTATAAACGATGCCAA CTAGCGATCGGGAGGCGTTA CCATGACGACCTTCCCGGCA
  Sty_pli  AAAGTCAGAGGTTCGAAGAC GATCAGATACCGTCCTAGTT CTGACTATAAACGATGCCAA CTAGCGATCGGGAGGCGTTA CCATGACGACCTTTCCGGCA

  Cio_int  GCTTGCGGGAAACCAAAGTC TTTGGGTTCCGGGGGAAGTA TGGTTGCAAAGCTGAAACTT AAAGGAATTGACGGAAGGGC ACCACCAGGAGTGGAGCCTG
 Che_sibo  GCTTGCGGGAAACCAAAGTC TTTGGGTTCCGGGGGAAGTA TGGTTGCAAAGCTGAAACTT AAAGGAATTGACGGAAGGGC ACCACCAGGAGTGGAGCCTG
 Mega_hia  GCTTGCGGGAAACCAAAGTC TTTGGGTTCCGGGGGAAGTA TGGTTGCAAAGCTGAAACTT AAAGGAATTGACGGAAGGGC ACCACCAGGAGTGGAGCCTG
Per_sagam  GCTTGCGGGAAACCAAAGTC TTTGGGTTCCGGGGGAAGTA TGGTTGCAAAGCTGAAACTT AAAGGAATTGACGGAAGGGC ACCACCAGGAGTGGAGCCTC
Asc_ahodr  GCTTGCGGGAAACCAAAGTC TTTGGGTTCCGGGGGAAGTA TGGTTGCAAAGCTGAAACTT AAAGGAATTGACGGAAGGGC ACCACCAGGCGTGGAGCCTG
   Hal_ro  GCTTCCGGGAAACCAAAGTC TTTCGGTTCCGGGGGAAGTA TGGTTGCAAAGCTGAAACTT AAAGGAATTGACGGAAGGGC ACCACCAGGAGTGGAGCCTG
  Sty_pli  GCTTCCGGGAAACCAAAGTC TTTGGGTTCCGGGGGAAGTA TGGTTGCAAAGCTGAAACTT AAAGGAATTGACGGAAGGGC ACCACCAGGAGTGGAGCCTG

  Cio_int  CGGCTTAATTTGACTCAACA CGGGAAATCTCACCCGGCCC GGACACAGTGAGGATTGACA GATTGAGAGCTCTTTCTTGA TTCTGTGGGTGGTGGTGCAT
 Che_sibo  CGGCTTAATTTGACTCAACA CGGGAAATCTCACCCGGCCC GGACACAGTGAGGATTGACA GATTGAGAGCTCTTTCTTGA TTCTGTGGGTGGTGGTGCAT
 Mega_hia  CGGCTTAATTTGACTCAACA CGGGAAATCTCACCCGGCCC GGACACAGTGAGGATTGACA GATTGAGAGCTCTTTCTTGA TTCTGTGGGTGGTGGTGCAT
Per_sagam  CGGCTTAATTTGACTCAACA CGGGAAATCTCACCCGGCCC GGACACAGTGAGGATTGACA GATTGAGAGCTCTTTCTTGA TTCTGTGGGTGGTGGTGCAT
Asc_ahodr  CGGCTTAATTTGACTCAACA CGGGGAATCTCACCCGGCCC GGACACAGTGAGGATTGACA GATTGAGAGCTCTTTCTTGA TTCTGTGGGTGGTGGTGCAT
   Hal_ro  CGGCTTAATTTGACTCAACA CGGGGAAACTCACCCGGCCC GGACACAGGTAGGATTGACA GATTGAGAGCTCTTTCTTGA TTCTGTGGGTGGTGGTGCAT
  Sty_pli  CGGCTTAATTTGACTCAACA CGGGGAAACTCACCCGGCCC GGACACAGGTAGGATTGACA GATTGAGAGCTCTTTCTTGA TTCTGTGGGTGGTGGTGCAT

  Cio_int  GGCCGTTCTTAGTTGGTGGA GCGATTTGTCTGGTTAATTC CGATAACGAACGAGACTCTG GCTTGCTAAATAGTTACGCG ACCCTCCCGGTCGGCGTTTA
 Che_sibo  GGCCGTTCTTAGTTGGTGGA GCGATTTGTCTGGTTAATTC CGATAACGAACGAGACTCTG GCTTGCTAAATAGTTACGCG ACCTTCCCGGTCGGCGTTTA
 Mega_hia  GGCCGTTCTTAGTTGGTGGA GCGATTTGTCTGGTTAATTC CGATAACGAACGAGACTCTG GCTTGCTAAATAGTTACGCG ACCTTCCCGGTCGGCGTTTA
Per_sagam  GGCCGTTCTTAGTTGGTGGA GCGATTTGTCTGGTTAATTC CGATAACGAACGAGACTCTA GCTTGCTAAATAGTTACGCG ACCTTCTCGGTCGGCGTCTA
Asc_ahodr  GGCCGTTCTTAGTTGGTGGA GCGATTTGTCTGGTTAATTC CGATAACGAACGAGACTCTG GCTTGCTAACTAGTTACGCG ACCCGATCGGTCGGCGTTTA
   Hal_ro  GGCCGTTCTTAGTTGGTGGA GCGATTTGTCTGGTTAATTC CGATAACGAACGAGACTCTG GCTTGCTAAATAGTTACGCG ACCTTCTCGGTCGGCGTCTA
  Sty_pli  GGCCGTTCTTAGTTGGTGGA GCGATTTGTCTGGTTAATTC CGATAACGAACGAGACTCTG GCATGCTAAATAGTTACGCG ACCTTCTCGGTCGGCGTCTA

  Cio_int  ACTTCTTAGAGGGACTAGTG GCGTTTAGCCACACGAGATT GAGCAATAACAGGTCTGTGA TGCCCTTGAGTGTTCGGGCC GCACGCGCGCTACACTGACC
 Che_sibo  ACTTCTTAGAGGGACTAGTG GCGTTTAGCCACACGAGATT GAGCAATAACAGGTCTGTGA TGCCCTTAGATGTTCGGGCC GCACGCGCGCTACACTGACC
 Mega_hia  ACTTCTTAGAGGGACTAGTG GCGTTTAGCCACACGAGATT GAGCAATAACAGGTCTGTGA TGCCCTTAGATGTTCGGGCC GCACGCGCGCTACACTGACC
Per_sagam  ACTTCTTAGAGGGACTAGTG GCGTTTAGCCACACGAGATT GAGCTATAACAGGTCTGTGA TGCCCTTAGATGTTCGGGCC GCACGCGCGCTACACTGACC
Asc_ahodr  ACTTCTTAGAGGGACTAGTG GCGTTTAGCCACACGAGATT GAGCAATAACAGGTCTGTGA TGCCCTTAGATGTTCGGGCC GCACGCGCGCTACACTGACC
   Hal_ro  ACTTCTTAGAGGGACTAGTG GCGCTTAGCCACACGAGATT GAGCAATAACAGGTCTGTGA TGCCCTTAGATGTTCGGGCC GCACGCGCGCTACACTGAAT
  Sty_pli  ACTTCTTAGAGGGACTAGTG GCGTTTAGCCACACGAGATT GAGCAATAACAGGTCTGTGA TGCCCTTAGATGTCCGGGCC GCACGCGCGCTACACTGAGT

  Cio_int  GGATCAGCGTGTCTCTTCCT TGGCCGAAAGGTCCGGGAAA CCCGTTGAACCCCGGTGGTG ATAGGGATAGGGAATTGCAA TTATTTCCCTTGAACGAGGA
 Che_sibo  GGATCAGCGTGTGTTCGCCT TGGCCGACAGGTCTGGGTAA CCCGATGAACCCCGGTCGTG CTAGGGATAGGGAATTGCAA TTATTTCCCTTGAACGAGGA
 Mega_hia  GGATCAGCGTGTATTCGCCT TGGCCGACAGGTCTGGGTAA CCCGATGAACCCCGGTCGTG CTAGGGATAGGGAATTGCAA TTATTTCCCTTGAACGAGGA
Per_sagam  GGATCAGCGTGTGCTCGCCT TGGCCGAAAGGTCTGGGTAA CCCGTTGAACCCCGGTCGTG CTAGGGATAGGGAATTGCAA TTATTTCCCTTGAACGAGGA
Asc_ahodr  GGATCAGCGTGTGCTCGCCT TGGCCGAAAGGTCCGGGTAA CCCGCTGAACCCCGGTCGTG CTAGGGATAGGGAATTGCAA TTGTTTCCCTTGAACGAGGA
   Hal_ro  GGATCAGCGAGTGAATGCCC TGGCCGAAAGGTCCGGGTAA CCCGTTGAACCCCATTCGTG ATTGGGATAGGGACTTGCAA TTGTTTCCCTTGAACGAGGA
  Sty_pli  GAAGCAGCGAGTGTCTAACC TGGCCGAAAGGTCCGGGTAA CCCGTTGAACCTCATTCGTG ATTGGGATAGGGACTTGCAA TTGTTTCCCTTGAACGAGGA

  Cio_int  ATTCCCAGTAAGCGCGAGTC ATTAGCTCGCGTTGATTACG TCCCTGCCCTTTGTACACAC CGCCCGTCGCTACTACCGAT TGAATGGTTTAGTGAGGTCC
 Che_sibo  ATTCCCAGTAAGCGCGAGTC ATTAGCTCGCGTTGATTACG TCCCTGCCCTTTGTACACAC CGCCCGTCGCTACTACCGAT TGAATGGTTTAGTGAGGTCC
 Mega_hia  ATTCCCAGTAAGCGCGAGTC ATCAGCTCGTGTTGATTACG TCCCTGCCCTTTGTACACAC CGCCCGTCGCTACTACCGAT TGAATGGTTTAGTGAGGTCC
Per_sagam  ATTCCCAGTAAGCGCGAGTC ATTAGCTCGCGTTGATTACG TCCCTGCCCTTTGTACACAC CGCCCGTCGCTACTACCGAT TGAATGGTTTAGTGAGGTCC
Asc_ahodr  ATGCCCAGTAAGCGCGAGTC ATCAGCTCGCGTTGATTACG TCCCTGCCCTTTGTACACAC CGCCCGTCGCTACTACCGAT TGAATGGTTTAGTGAGGTCC
   Hal_ro  ATTCCCAGTAAGCGCAAGTC ATCAACTTGCGTTGATTACG TCCCTGCCCTTTGTACACAC CGCCCGTCGCTACTACCGAT TGAATGGTTTAGTGAGATCC
  Sty_pli  ATTCCCAGTAAGCGCAAGTC ATCAACTTGCGTTGATTACG TCCCTGCCCTTTGTACACAC CGCCCGTCGCTACTACCGAT TGAATGGTTTAGTGAGATCC

  Cio_int  TCCGATTGGACCCGGCGCGG TCGGCAACGGCGCCGGAAAA GACGATCTAACTTGATCATT TAGAGGA
 Che_sibo  TCCGATTGGGCCCGGCGCGG CTGGCAACGGAGCCGGAGAA GACGATCTAACTTGATCATT TAGAGGA
 Mega_hia  TCCGATTGGGCCCGGCGCGG CTGGCAACGGAGCCGGAGAA GACGATCAAACTTGATCATT TAGAGGA
Per_sagam  TCCGACTGGATCTGGCGCGG TCGGCAACGGAGCCGGGGAA GACGATCTAACTTGATCATT TAGAGGA
Asc_ahodr  TCCGATTGGACCTGGCGCGG TCGGCAACGGAGCCGGAAAA GACGATCTAACTTGATCATT TAGAGGA
   Hal_ro  TTGGATTGGCCCCTTCGCGG TCGGCAACGGCGGCGGAGAA GACGATCAAACTTGATCATT TAGAGGA
  Sty_pli  TTGGATCGGCCCCGTCGCTG CCGGCAACGGCGTCGGAGAA GACGATCAAACTTGATCATT TAGAGGA

;
 end;
------------------------------------------------------------------------ ---------------------------------------------------------------------------- ---------------------------
 
 

Dataset2: 260 amino acid sites from 7 ascidians (nexus format) 

---------------------------------------------------------------------------- ---------------------------------------------------------------------------- -------------------------
#NEXUS
[COIAA210.nex -- data title]

[Name: Che_sibo          Len:   260  Check: 92CD8BE0]
[Name: Mega_hia          Len:   260  Check: 8B31F35A]
[Name: Cio_int           Len:   260  Check:  9272385]
[Name: Hal_ro            Len:   260  Check: 71D87F0E]
[Name: Sty_pli           Len:   260  Check: 96D31627]
[Name: Asc_ahodri        Len:   260  Check: F0D9BA70]
[Name: Per_sagami        Len:   260  Check: B4E1959D]
 

begin data;
 dimensions ntax=7 nchar=260;
 format datatype=protein interleave missing=-;
 matrix
 Che_sibo  LSFWLLPPALFLLLSSAMIG LGAGTGWTMYPPLANGIMHA GPSVDCAIFSLHLAGISSIL GSINFLVTMFNMYVKGSGIS HLSLFCWSILVTTILLVLSL
 Mega_hia  MSFWLLPPAFFFLISSSMMG LGTGTGWTVYPPLAGNMAHS GPSVNAAIFSLHLAGISSIL GSINFLVTMMNMKTGGFFSM NLSLFCWSVIITTVLLILSL
  Cio_int  MSFWLLPPSFFLLLSGFSGS AGVGTGWTVYPPLSANIGHS NTGVDMAIFSLHLAGVSSIL GSVNFLVTLFNMKNKGKSMS NLSLFCWSLIVTTILLVLSL
   Hal_ro  MSFWLLPPALFMLLLSSVIE SGVGTGWTVYPPLSGNLAHS GPALDCAIFSLHLAGVSSIL GSLNFMTTMFNMGLKGGGLF MMPLFCWSVLITTLLLLLSL
  Sty_pli  MSFWLLPPALVFLLISSFIE SGVGTGWTVYPPLAGNLAHS GGALDCAIFSLHLAGISSIL GSLNFMTTMFNMKTKGWVMF SMPLFCWTVLVTTLLLLLSL
Asc_ahodr  ISFWLLPPSLLLLLSSALVE VGAGTGWTVYPPLSHITSHS GGAVDLAIFSLHVSGASSIL GAINFITTIFNMRGPGLLMH GLPLFVWSVLITAFLLLLSL
Per_sagam  ISFWLLPPSLLLLFASMLTE AGVGTGWTIYPPLSSATAHS GGSVDLAMFSLHLSGASSIL GAINFICTIFNMRVKSLSFH NLPLFVWSVLITAFLLWLSL

 Che_sibo  PVLAAAITMLLFDRNFNTSF FDPGGGGDPILFQHLFWFFG HPEVYILILPGFGIISHVVI FGFYGMVWAMCGIGLLGFLV WAHHMFTVGMDVDSRAYFTA
 Mega_hia  PVLAAAITMLLFDRNLNTSF FDPGGGGDPILYQHLFWFFG HPEVYILILPGFGMISHVVI YGYYGMVWAMLGIGFLGFLV WAHHMFTVGMDVDSRAYFTA
  Cio_int  PVLAAAITMLLFDRNFNTTF FDPNGGGDPILYQHLFWFFG HPEVYILILPGFGMISHVII FGYYGMVWAMGGIGFLGFLV WAHHMFSVGMDVDSRAYFTS
   Hal_ro  PVLAAAITMLLFGRNLNTSF FDPAGGGDPVLYQHLFWLFG HPEAYILILPGFGMISHIIV FGFYGMVWAIIGIGFLGFLV WAHHMFTVGMDVDSRAYFTA
  Sty_pli  PVLAAAITMLLFDRNINTSF FDPVGGGDPVLYQHLFWFFG HPEVYILILPGFGMISHVIV FGFYGMVWAVIGIGFLGFLV WAHHMFTVGMDIDSRAYFTA
Asc_ahodr  PVLAGAITMLLTDRNFSTSF FDPSGGGDPILYQHLFWFFG HPEVYILILPAMGIVSHVII FGQIGMIYAMLSIGLLGFIV WAHHMYTVGLDVDTRAYFTA
Per_sagam  PVLAGAITMLLTDRNFNTTF FDPAGGGDPVLFQHLFWFFG HPEVYILILPGFGIVSHIVI FGYLGMVYAMFSIGVLGFIV WAHHMFTVGLDMDTGAYFTA

 Che_sibo  ATMVIAVPTGIKVFSWLTTM FGGMINYSVSMLWALGFLFL FTLGGLTGVILSNSSLDLVL
 Mega_hia  ATMIIAVPTGIKIFSWLTTL FGGILDYNIAFLWAIGFLFL FTLGGFTGVVLANSSLDLVL
  Cio_int  ATMIIAVPTGIKVFSWVSTL LGAKIHWGLPLLWAYGFLFL FTIGGLTGIVLANCSLDLVL
   Hal_ro  ATMVIAVPTGIKVFSWVSTL VGAKIVWHIAMYWVCGFLFL FTLGGLTGIILSNCSLDLVL
  Sty_pli  ATMVIAVPTGIKVFSWLSTM LGAKIIWNVPMYWVFGFLFL FTFGGLTGIILSNCSLDLVL
Asc_ahodr  ATMIIAVPTGIKIFSWIATM WGGSIHLRTPMLFAIGFIFL FTVGGLTGVILANAGIDIAL
Per_sagam  ATMIIAMPTGIKMFSWLATL WGGSMDLGTPGLFAIGFIFL FTVGGVTGVVLANSGMDMAL

;
 end;

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